Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004623 Vanilla planifolia HOM05D007955 ORTHO05D010034 1.8e-51 205.7 108 100.0
arahy.Tifrunner.gnm1.ann1.6E9FUG Arachis hypogaea HOM05D007955 ORTHO05D010034 8.5e-25 117.1 80 67.5
arahy.Tifrunner.gnm1.ann1.T5U9L2 Arachis hypogaea HOM05D007955 ORTHO05D010034 8.5e-25 117.1 80 67.5
CARHR023000 Cardamine hirsuta HOM05D007955 ORTHO05D010034 1.9e-24 115.9 99 57.6
CiPaw.07G236600 Carya illinoinensis HOM05D007955 ORTHO05D010034 2.5e-24 115.5 94 70.2
Manes.18G103900 Manihot esculenta HOM05D007955 ORTHO05D010034 3.2e-24 115.2 90 61.1
Potri.013G108100 Populus trichocarpa HOM05D007955 ORTHO05D010034 4.2e-24 114.8 117 52.1
Dinv41742 Davidia involucrata HOM05D007955 ORTHO05D010034 9.4e-24 113.6 107 55.1
QL02p025993 Quercus lobata HOM05D007955 ORTHO05D010034 9.4e-24 113.6 86 59.3
Sp1g20140 Schrenkiella parvula HOM05D007955 ORTHO05D010034 9.4e-24 113.6 79 67.1
Aa31LG7G6520 Aethionema arabicum HOM05D007955 ORTHO05D010034 1.2e-23 113.2 82 63.4
Sc23g0001440 Simmondsia chinensis HOM05D007955 ORTHO05D010034 2.1e-23 112.5 82 62.2
Duzib177G0365 Durio zibethinus HOM05D007955 ORTHO05D010034 2.7e-23 112.1 98 58.2
CDE05G3389 Ceratophyllum demersum HOM05D007955 ORTHO05D010034 4.7e-23 111.3 96 56.2
Peaxi162Scf00391g00733 Petunia axillaris HOM05D007955 ORTHO05D010034 4.7e-23 111.3 76 81.6
BcaC07g39172 Brassica carinata HOM05D007955 ORTHO05D010034 6.1e-23 110.9 79 65.8
Carub.0001s2214 Capsella rubella HOM05D007955 ORTHO05D010034 6.1e-23 110.9 79 64.6
Hund16783 Selenicereus undatus HOM05D007955 ORTHO05D010034 6.1e-23 110.9 77 67.5
Thhalv10009125m.g Eutrema salsugineum HOM05D007955 ORTHO05D010034 7.9e-23 110.5 79 64.6
CANSAT25G1976 Cannabis sativa HOM05D007955 ORTHO05D010034 1.0e-22 110.2 70 71.4
MD15G1408300 Malus domestica HOM05D007955 ORTHO05D010034 1.8e-22 109.4 94 55.3
AT1G22630 Arabidopsis thaliana HOM05D007955 ORTHO05D010034 2.3e-22 109.0 90 60.0
Cfa012936 Carpinus fangiana HOM05D007955 ORTHO05D010034 2.3e-22 109.0 87 70.1
Haze_21296 Corylus avellana HOM05D007955 ORTHO05D010034 2.3e-22 109.0 87 70.1
Aqoxy6G00096 Aquilegia oxysepala HOM05D007955 ORTHO05D010034 3.9e-22 108.2 76 75.0
Gohir.A05G273100 Gossypium hirsutum HOM05D007955 ORTHO05D010034 3.9e-22 108.2 78 66.7
Gohir.D05G275500 Gossypium hirsutum HOM05D007955 ORTHO05D010034 3.9e-22 108.2 78 66.7
Gorai.009G288600 Gossypium raimondii HOM05D007955 ORTHO05D010034 3.9e-22 108.2 78 66.7
AL1G36160 Arabidopsis lyrata HOM05D007955 ORTHO05D010034 6.7e-22 107.5 79 63.3
BolC8t49802H Brassica oleracea HOM05D007955 ORTHO05D010034 6.7e-22 107.5 79 63.3
CSS0011086 Camellia sinensis var. sinensis HOM05D007955 ORTHO05D010034 6.7e-22 107.5 78 64.1
ECA247G2775 Erigeron canadensis HOM05D001035 ORTHO05D001045 6.7e-22 107.5 77 62.3
DCAR_001459 Daucus carota HOM05D007955 ORTHO05D010034 8.8e-22 107.1 82 61.0
HanXRQChr02g0044251 Helianthus annuus HOM05D007955 ORTHO05D010034 8.8e-22 107.1 76 64.5
PGSC0003DMG400009285 Solanum tuberosum HOM05D007955 ORTHO05D010034 8.8e-22 107.1 76 78.9
Nitab4.5_0002013g0010 Nicotiana tabacum HOM05D007955 ORTHO05D010034 1.1e-21 106.7 76 65.8
THA.LOC104809734 Tarenaya hassleriana HOM05D007955 ORTHO05D010034 1.1e-21 106.7 86 58.1
Sopen11g011230 Solanum pennellii HOM05D007955 ORTHO05D010034 1.5e-21 106.3 76 65.8
Nitab4.5_0003211g0020 Nicotiana tabacum HOM05D007955 ORTHO05D010034 2.0e-21 105.9 101 52.5
Lsat_1_v5_gn_1_12280 Lactuca sativa HOM05D007955 ORTHO05D010034 2.6e-21 105.5 77 62.3
EL10Ac1g00118 Beta vulgaris HOM05D007955 ORTHO05D010034 4.4e-21 104.8 77 66.2
PGR042G1239 Punica granatum HOM05D007955 ORTHO05D010034 4.4e-21 104.8 76 65.8
Rhsim06G0114600 Rhododendron simsii HOM05D007955 ORTHO05D010034 4.4e-21 104.8 78 64.1
MELO3C021951.2 Cucumis melo HOM05D007955 ORTHO05D010034 5.7e-21 104.4 103 53.4
RcHm_v2.0_Chr7g0228151 Rosa chinensis HOM05D007955 ORTHO05D010034 5.7e-21 104.4 102 53.9
Eucgr.F03002 Eucalyptus grandis HOM05D007955 ORTHO05D010034 7.4e-21 104.0 92 56.5
Hma1.2p1_0004F.1_g003980 Hydrangea macrophylla HOM05D007955 ORTHO05D010034 7.4e-21 104.0 69 68.1
ClCG00G002970 Citrullus lanatus HOM05D007955 ORTHO05D010034 9.7e-21 103.6 63 71.4
ClCG09G017850 Citrullus lanatus HOM05D007955 ORTHO05D010034 9.7e-21 103.6 63 71.4
CsaV3_2G014460 Cucumis sativus L. HOM05D007955 ORTHO05D010034 9.7e-21 103.6 76 64.5
FvH4_5g32101 Fragaria vesca HOM05D007955 ORTHO05D010034 9.7e-21 103.6 70 65.7
Solyc11g021365.2 Solanum lycopersicum HOM05D007955 ORTHO05D010034 9.7e-21 103.6 84 59.5
Thecc.08G188200 Theobroma cacao HOM05D007955 ORTHO05D010034 1.7e-20 102.8 98 56.1
TWI14G1427 Tripterygium wilfordii HOM05D007955 ORTHO05D010034 2.8e-20 102.1 76 60.5
MBI03_g18672_MAGBIO Magnolia biondii HOM05D007955 ORTHO05D010034 8.2e-20 100.5 104 51.9
Glyma.08G239000 Glycine max HOM05D007955 ORTHO05D010034 1.1e-19 100.1 70 71.4
SEGI_23617 Sequoiadendron giganteum HOM05D007955 ORTHO05D010034 1.1e-19 100.1 64 84.4
VMungo1127G1330 Vigna mungo HOM05D007955 ORTHO05D010034 1.4e-19 99.8 99 50.5
PSO170G1023 Papaver somniferum HOM05D007955 ORTHO05D010034 1.8e-19 99.4 65 86.2
SMO119G0376 Selaginella moellendorffii HOM05D007955 ORTHO05D010034 2.4e-19 99.0 61 83.6
PSO782G1662 Papaver somniferum HOM05D007955 ORTHO05D010034 9.1e-19 97.1 65 84.6
SGA_v2.0_scaffold24G10574 Striga asiatica HOM05D007955 ORTHO05D010034 1.2e-18 96.7 94 66.0
Migut.C01298 Erythranthe guttata HOM05D007955 ORTHO05D010034 2.0e-18 95.9 78 61.5
Medtr4g032905 Medicago truncatula HOM05D007955 ORTHO05D010034 1.0e-17 93.6 98 59.2
unitig_578.g16590 Utricularia gibba HOM05D007955 ORTHO05D010034 1.0e-17 93.6 61 86.9
AagrBONN_evm.TU.Sc2ySwM_228.898 Anthoceros agrestis HOM05D007955 ORTHO05D010034 2.9e-17 92.0 65 80.0
Mapoly0510s0001 Marchantia polymorpha HOM05D007955 ORTHO05D010034 5.0e-17 91.3 69 76.8
C08p21650 Brassica napus HOM05D000726 ORTHO05D010034 6.5e-17 90.9 71 59.2
TPR.G34150 Trifolium pratense HOM05D007955 ORTHO05D010034 6.5e-17 90.9 96 63.5
Zm00001eb356110 Zea mays HOM05D007955 ORTHO05D010034 1.1e-16 90.1 61 82.0
A08p28450 Brassica napus HOM05D000726 ORTHO05D010034 9.4e-16 87.0 71 57.7
Pp3c19_10130 Physcomitrium patens HOM05D007955 ORTHO05D010034 1.6e-15 86.3 52 71.2
BraA08t34774Z Brassica rapa HOM05D000726 ORTHO05D010034 3.6e-15 85.1 58 63.8
Cc00_g22060 Coffea canephora HOM05D007955 ORTHO05D010034 4.4e-13 78.2 48 72.9
Nn3g20179 Nelumbo nucifera HOM05D007955 ORTHO05D010034 3.7e-12 75.1 46 73.9
Sed0016691 Sechium edule HOM05D007955 ORTHO05D010034 1.1e-11 73.6 65 52.3
Prupe.1G552800 Prunus persica HOM05D007955 ORTHO05D010034 4.1e-11 71.6 45 71.1
FAN08G1854 Fragaria x ananassa HOM05D000666 ORTHO05D001431 7.0e-11 70.9 41 70.7
FAN13G0857 Fragaria x ananassa HOM05D000666 ORTHO05D001431 7.0e-11 70.9 41 70.7
Os05g0105800 Oryza sativa ssp. japonica HOM05D007955 ORTHO05D010034 2.6e-10 68.9 45 68.9
vmacro12469 Vaccinium macrocarpon HOM05D007955 ORTHO05D010034 2.9e-09 65.5 46 67.4


User provided reference genes

Program Settings