Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 5.4e-130 467.6 227 100.0
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 5.8e-76 288.1 219 66.2
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 4.9e-75 285.0 225 64.4
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 7.9e-73 277.7 222 62.6
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 3.3e-71 272.3 229 59.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.6e-70 270.0 228 59.6
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 2.8e-70 269.2 230 60.0
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 2.8e-70 269.2 233 60.1
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 3.7e-70 268.9 224 58.5
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 6.2e-70 268.1 232 58.6
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 8.2e-70 267.7 233 59.7
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.1e-69 267.3 223 61.9
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 5.3e-69 265.0 222 58.6
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 3.4e-68 262.3 223 59.6
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 3.4e-68 262.3 223 62.3
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 4.5e-68 261.9 232 59.1
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.0e-67 260.8 229 59.0
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.3e-67 260.4 225 57.8
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.7e-67 260.0 223 60.5
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 2.9e-67 259.2 226 59.3
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 5.0e-67 258.5 224 60.7
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 8.4e-67 257.7 221 58.4
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 8.4e-67 257.7 227 58.6
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.1e-66 257.3 221 58.4
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.4e-66 256.9 228 58.8
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.9e-66 256.5 229 59.8
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 1.9e-66 256.5 225 60.0
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.5e-66 256.1 218 59.6
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.5e-66 256.1 224 58.9
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 3.2e-66 255.8 225 61.3
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 5.5e-66 255.0 236 54.2
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 7.1e-66 254.6 220 60.9
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 9.3e-66 254.2 223 57.0
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 9.3e-66 254.2 220 59.5
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.2e-65 253.8 224 58.0
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.7e-65 252.7 224 56.2
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.7e-65 252.7 223 57.8
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.7e-65 252.7 220 58.2
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.7e-65 252.7 227 56.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 2.7e-65 252.7 223 57.4
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 3.5e-65 252.3 226 57.5
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 4.6e-65 251.9 241 56.8
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 6.1e-65 251.5 229 59.0
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.3e-64 250.4 232 56.5
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 2.3e-64 249.6 223 58.3
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 3.0e-64 249.2 233 56.2
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.1e-63 247.3 226 58.8
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.1e-63 247.3 226 58.8
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 2.5e-63 246.1 232 55.2
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 9.7e-63 244.2 239 56.5
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.3e-62 243.8 209 58.4
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.6e-62 243.4 224 56.7
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.8e-62 242.7 223 59.6
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 3.7e-62 242.3 231 56.3
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 3.7e-62 242.3 226 58.8
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 8.2e-62 241.1 212 56.6
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.1e-61 239.2 224 56.7
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 5.3e-61 238.4 231 57.6
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 5.3e-61 238.4 224 54.5
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 6.9e-61 238.0 205 62.9
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.5e-60 236.9 223 57.0
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.0e-60 236.5 228 53.9
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 3.4e-60 235.7 234 56.8
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 5.9e-60 235.0 225 56.0
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.3e-59 233.8 224 57.1
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.7e-59 233.4 231 56.7
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 3.8e-59 232.3 230 54.8
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 6.5e-59 231.5 228 53.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 8.5e-59 231.1 226 54.0
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 8.5e-59 231.1 226 54.4
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.4e-58 230.3 221 52.5
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.4e-58 230.3 222 53.6
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.9e-58 229.9 222 54.1
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.9e-58 229.9 229 52.8
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 4.2e-58 228.8 211 57.3
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 5.5e-58 228.4 220 53.6
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.6e-57 226.9 205 61.0
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 2.1e-57 226.5 229 51.1
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 2.1e-57 226.5 219 53.4
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 4.6e-57 225.3 220 54.1
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.6e-57 225.3 220 53.6
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 4.6e-57 225.3 227 54.2
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 6.1e-57 224.9 229 53.7
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.0e-56 224.2 233 52.8
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 2.3e-56 223.0 224 53.6
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 3.0e-56 222.6 269 48.7
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 3.9e-56 222.2 220 53.2
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 5.1e-56 221.9 226 53.1
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 6.7e-56 221.5 226 52.7
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.1e-55 220.7 211 53.1
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.0e-55 219.9 231 51.1
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.3e-55 219.2 220 53.2
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.8e-54 216.1 229 51.5
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.1e-53 214.2 214 50.5
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.8e-53 213.4 284 45.1
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.6e-52 209.5 229 51.5
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.7e-51 206.8 265 47.9
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.9e-51 206.1 213 52.1
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 2.9e-51 206.1 234 51.3
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 1.9e-50 203.4 242 48.8
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 4.2e-50 202.2 231 50.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 7.2e-50 201.4 233 51.1
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 6.1e-49 198.4 245 46.5
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 2.4e-45 186.4 215 49.3
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 4.5e-44 182.2 175 52.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.3e-43 180.6 160 60.0
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.9e-43 179.5 216 48.1
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 2.1e-41 173.3 228 44.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 4.4e-39 165.6 155 54.2
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 5.7e-39 165.2 210 44.3
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 4.1e-37 159.1 231 42.4
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 4.1e-37 159.1 225 41.3
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.6e-36 157.1 141 57.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.5e-36 155.6 228 43.4
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.9e-34 150.2 228 42.1
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 1.0e-32 144.4 136 51.5
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 8.8e-32 141.4 232 38.8
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.7e-30 137.1 125 58.4
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 6.3e-30 135.2 93 65.6
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.1e-29 132.9 173 40.5
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 8.5e-27 124.8 92 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 3.2e-26 122.9 140 52.1
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 2.7e-25 119.8 205 37.1
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 1.5e-23 114.0 220 33.6
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 3.4e-23 112.8 208 38.5
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.4e-21 107.5 112 52.7
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 5.0e-19 99.0 137 42.3
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.9e-18 97.1 100 51.0
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.3e-18 96.3 104 52.9
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 7.2e-18 95.1 122 41.0
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.4e-13 80.9 183 30.6
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.4e-13 80.9 148 39.2
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.6e-12 75.9 136 39.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.8e-08 63.9 53 56.6
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 8.9e-08 61.6 77 41.6
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 4.4e-07 59.3 69 44.9
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 4.4e-07 59.3 101 39.6
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 2.2e-06 57.0 114 35.1


User provided reference genes

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