Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004598 Vanilla planifolia HOM05D003830 ORTHO05D004446 0.0e+00 2149.0 1154 100.0
GSVIVG01010345001 Vitis vinifera HOM05D003830 ORTHO05D004446 4.6e-169 599.7 1211 40.5
TAR622G0818 Trochodendron aralioides HOM05D003830 ORTHO05D004446 4.9e-163 579.7 1216 39.5
Nn4g22404 Nelumbo nucifera HOM05D003830 ORTHO05D004446 2.4e-162 577.4 1247 39.6
TAR374G0580 Trochodendron aralioides HOM05D003830 ORTHO05D004446 2.1e-161 574.3 1211 40.8
TAR629G0808 Trochodendron aralioides HOM05D003830 ORTHO05D004446 8.7e-160 568.9 1218 38.9
Cfa009315 Carpinus fangiana HOM05D003830 ORTHO05D008363 1.5e-159 568.2 1224 39.7
Nn3g16538 Nelumbo nucifera HOM05D003830 ORTHO05D004446 4.3e-159 566.6 1248 38.1
Phvul.002G176100 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 3.1e-157 560.5 1216 38.8
Prupe.1G233200 Prunus persica HOM05D003830 ORTHO05D004446 9.0e-157 558.9 1235 39.6
VMungo0251G0774 Vigna mungo HOM05D003830 ORTHO05D004446 1.3e-155 555.1 1225 39.1
Manes.13G015800 Manihot esculenta HOM05D003830 ORTHO05D004446 3.8e-155 553.5 1230 39.2
Thecc.02G274300 Theobroma cacao HOM05D003830 ORTHO05D004446 7.4e-151 539.3 1209 39.7
Atru.chr11.2246 Acer truncatum HOM05D003830 ORTHO05D004446 4.1e-149 533.5 1218 39.0
Atru.chr11.2261 Acer truncatum HOM05D003830 ORTHO05D004446 5.3e-149 533.1 1218 39.0
CiPaw.05G115100 Carya illinoinensis HOM05D003830 ORTHO05D004446 9.0e-149 532.3 1215 38.9
Dinv10992 Davidia involucrata HOM05D003830 ORTHO05D004446 2.6e-148 530.8 1218 38.0
QL03p054734 Quercus lobata HOM05D003830 ORTHO05D004446 5.0e-147 526.6 1222 38.7
Aqoxy3G01454 Aquilegia oxysepala HOM05D003830 ORTHO05D004446 1.9e-146 524.6 1237 36.9
Gorai.005G171400 Gossypium raimondii HOM05D003830 ORTHO05D004446 4.3e-143 513.5 1216 38.1
Dinv14800 Davidia involucrata HOM05D003830 ORTHO05D004446 5.7e-143 513.1 1176 37.6
Gohir.D02G152400 Gossypium hirsutum HOM05D003830 ORTHO05D004446 5.7e-143 513.1 1216 37.5
Cc11_g16600 Coffea canephora HOM05D003830 ORTHO05D004446 4.1e-141 506.9 1212 37.1
Glyma.11G248200 Glycine max HOM05D003830 ORTHO05D004446 2.0e-140 504.6 1211 39.0
MBI08_g41743_MAGBIO Magnolia biondii HOM05D003830 ORTHO05D004446 2.0e-140 504.6 1219 34.9
Phvul.001G259600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 3.4e-140 503.8 1217 36.5
Ciclev10030548m.g Citrus clementina HOM05D003830 ORTHO05D004446 1.0e-139 502.3 1227 37.7
Gohir.A03G128600 Gossypium hirsutum HOM05D003830 ORTHO05D004446 3.8e-139 500.4 1227 37.1
Oeu041685.1 Olea europaea HOM05D003830 ORTHO05D004446 3.8e-139 500.4 1215 37.1
arahy.Tifrunner.gnm1.ann1.D6D033 Arachis hypogaea HOM05D003830 ORTHO05D004446 3.2e-138 497.3 1260 36.5
Actinidia25761 Actinidia chinensis HOM05D003830 ORTHO05D004446 4.2e-138 496.9 1198 37.6
COL.COLO4_23621 Corchorus olitorius HOM05D003830 ORTHO05D004446 2.7e-137 494.2 1216 37.7
arahy.Tifrunner.gnm1.ann1.ZS76EK Arachis hypogaea HOM05D003830 ORTHO05D004446 3.6e-137 493.8 1267 36.1
Os12g0239200 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 6.1e-137 493.0 1260 35.2
Solyc05g014640.3 Solanum lycopersicum HOM05D003830 ORTHO05D004446 1.1e-135 488.8 1220 37.2
Manes.12G014700 Manihot esculenta HOM05D003830 ORTHO05D004446 5.7e-135 486.5 1223 37.2
CSS0000134 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 1.7e-134 485.0 1228 36.5
Ca_16482_v3 Cicer arietinum L. HOM05D003830 ORTHO05D004446 1.7e-134 485.0 1222 34.5
Glyma.18G009000 Glycine max HOM05D003830 ORTHO05D004446 1.7e-134 485.0 1210 38.4
Hma1.2p1_0167F.1_g073780 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 1.1e-133 482.3 1211 38.2
TWI75G0226 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 6.9e-133 479.6 1226 37.0
Duzib248G1684 Durio zibethinus HOM05D003830 ORTHO05D004446 1.2e-132 478.8 1211 35.8
Sopen05g009770 Solanum pennellii HOM05D003830 ORTHO05D004446 1.2e-132 478.8 1204 37.3
PGSC0003DMG400017461 Solanum tuberosum HOM05D003830 ORTHO05D004446 1.2e-132 478.8 1219 37.1
MD16G1111800 Malus domestica HOM05D003830 ORTHO05D004446 5.9e-132 476.5 1263 37.1
Rhsim12G0030500 Rhododendron simsii HOM05D003830 ORTHO05D004446 1.3e-131 475.3 1238 35.7
MD13G1112200 Malus domestica HOM05D003830 ORTHO05D004446 5.0e-131 473.4 1281 36.1
Sabra10G0048900 Salix brachista HOM05D003830 ORTHO05D004446 6.5e-131 473.0 1269 35.5
TPR.G22439 Trifolium pratense HOM05D003830 ORTHO05D004446 8.5e-131 472.6 1232 35.1
ClCG08G017300 Citrullus lanatus HOM05D003830 ORTHO05D004446 9.4e-130 469.2 1233 35.8
CAN.G692.1 Capsicum annuum HOM05D003830 ORTHO05D004446 1.0e-128 465.7 1211 36.2
Nitab4.5_0000240g0070 Nicotiana tabacum HOM05D003830 ORTHO05D004446 1.0e-128 465.7 1188 36.4
SalBow2G2689 Salvia bowleyana HOM05D003830 ORTHO05D004446 1.4e-128 465.3 1219 36.3
Oeu038669.1 Olea europaea HOM05D003830 ORTHO05D004446 3.9e-128 463.8 1213 36.9
Lalb_Chr08g0230701 Lupinus albus HOM05D003830 ORTHO05D004446 1.5e-127 461.8 1232 36.2
Lj4g0001101 Lotus japonicus HOM05D003830 ORTHO05D004446 5.7e-127 459.9 1243 34.9
Peaxi162Scf00128g00924 Petunia axillaris HOM05D003830 ORTHO05D004446 9.7e-127 459.1 1208 36.6
TWI36G0084 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 1.7e-126 458.4 1217 35.4
Os12g0239000 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 2.8e-126 457.6 1259 35.4
DCAR_024085 Daucus carota HOM05D003830 ORTHO05D004446 4.8e-126 456.8 1219 35.1
Eucgr.H04665 Eucalyptus grandis HOM05D003830 ORTHO05D004446 1.4e-125 455.3 1212 37.1
Duzib268G1283 Durio zibethinus HOM05D003830 ORTHO05D004446 7.0e-125 453.0 1207 37.3
Nitab4.5_0011772g0020 Nicotiana tabacum HOM05D003830 ORTHO05D004446 7.0e-125 453.0 1190 36.0
VMungo1383G3029 Vigna mungo HOM05D003830 ORTHO05D004446 8.5e-123 446.0 1205 35.3
Glyma.08G102200 Glycine max HOM05D003830 ORTHO05D004446 1.1e-122 445.7 1215 35.7
CANSAT01G2001 Cannabis sativa HOM05D003830 ORTHO05D004446 1.9e-122 444.9 1239 35.5
Sed0027794 Sechium edule HOM05D003830 ORTHO05D004446 2.7e-121 441.0 1219 35.3
RcHm_v2.0_Chr4g0431121 Rosa chinensis HOM05D003830 ORTHO05D004446 8.0e-121 439.5 1244 34.9
MSTRG.524 Avicennia marina HOM05D003830 ORTHO05D004446 1.8e-120 438.3 1228 35.3
PSO782G2541 Papaver somniferum HOM05D003830 ORTHO05D004446 1.8e-120 438.3 1209 36.6
TWI18G0501 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 5.2e-120 436.8 1206 35.7
EL10Ac6g13438 Beta vulgaris HOM05D003830 ORTHO05D004446 2.6e-119 434.5 1221 34.9
AUR62005571 Chenopodium quinoa HOM05D003830 ORTHO05D004446 3.3e-119 434.1 1211 35.8
Duzib251G0504 Durio zibethinus HOM05D003830 ORTHO05D004446 1.7e-118 431.8 1143 36.1
MSTRG.7981 Avicennia marina HOM05D003830 ORTHO05D004446 3.7e-118 430.6 1212 33.7
PSO063G3359 Papaver somniferum HOM05D003830 ORTHO05D004446 4.8e-118 430.3 1220 35.6
vmacro01085 Vaccinium macrocarpon HOM05D003830 ORTHO05D004446 8.2e-118 429.5 1318 32.9
FAN17G1537 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.4e-117 428.7 1246 35.3
HPP92_006184 Vanilla planifolia HOM05D003830 ORTHO05D004446 3.1e-117 427.6 1067 37.7
FAN22G2024 Fragaria x ananassa HOM05D003830 ORTHO05D004446 7.0e-117 426.4 1248 34.9
FvH4_4g24320 Fragaria vesca HOM05D003830 ORTHO05D004446 2.0e-116 424.9 1255 35.5
Lalb_Chr23g0277961 Lupinus albus HOM05D003830 ORTHO05D004446 2.7e-116 424.5 1216 33.6
Potri.010G056200 Populus trichocarpa HOM05D003830 ORTHO05D004446 2.7e-116 424.5 1260 34.3
FAN12G3820 Fragaria x ananassa HOM05D003830 ORTHO05D004446 5.9e-116 423.3 1251 34.5
CsaV3_2G025330 Cucumis sativus L. HOM05D003830 ORTHO05D004446 1.3e-115 422.2 1222 34.1
ECA234G2423 Erigeron canadensis HOM05D003830 ORTHO05D004446 1.3e-115 422.2 1198 33.3
Sc11g0000660 Simmondsia chinensis HOM05D003830 ORTHO05D004446 1.1e-114 419.1 1220 36.2
Migut.K00697 Erythranthe guttata HOM05D003830 ORTHO05D004446 2.5e-114 417.9 1213 34.6
Potri.008G178600 Populus trichocarpa HOM05D003830 ORTHO05D004446 3.2e-114 417.5 1232 32.6
Rhsim12G0031400 Rhododendron simsii HOM05D003830 ORTHO05D004446 2.1e-113 414.8 1016 36.5
AUR62024159 Chenopodium quinoa HOM05D003830 ORTHO05D004446 2.7e-113 414.5 1205 34.2
MELO3C010729.2 Cucumis melo HOM05D003830 ORTHO05D004446 6.3e-110 403.3 1231 34.9
PGR102G1232 Punica granatum HOM05D003830 ORTHO05D004446 2.4e-109 401.4 1213 34.3
Lj6C822T9 Lonicera japonica HOM05D003830 ORTHO05D004446 2.7e-108 397.9 1067 36.3
Sabra08G0136300 Salix brachista HOM05D003830 ORTHO05D004446 3.5e-108 397.5 1249 32.3
CSS0032396 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 5.0e-107 393.7 834 40.4
Psat5g094600 Pisum sativum HOM05D003830 ORTHO05D004446 5.0e-107 393.7 1190 32.4
Zm00001eb409890 Zea mays HOM05D003830 ORTHO05D004446 1.5e-106 392.1 1259 33.9
ATR0609G075 Amborella trichopoda HOM05D003830 ORTHO05D004446 4.7e-105 387.1 880 39.0
Zm00001eb133500 Zea mays HOM05D003830 ORTHO05D004446 2.3e-104 384.8 1268 32.1
CARHR027310 Cardamine hirsuta HOM05D003830 ORTHO05D004446 1.1e-101 375.9 1232 31.3
Oeu056685.2 Olea europaea HOM05D003830 ORTHO05D004446 7.0e-101 373.2 1294 31.5
Cpa.g.c26951.1 Carica papaya HOM05D003830 ORTHO05D004446 3.8e-99 367.5 1062 34.9
Sp1g24060 Schrenkiella parvula HOM05D003830 ORTHO05D004446 4.3e-98 364.0 1211 30.6
arahy.Tifrunner.gnm1.ann1.MTFP9U Arachis hypogaea HOM05D003830 ORTHO05D004446 4.1e-93 347.4 1235 31.6
HanXRQChr08g0207491 Helianthus annuus HOM05D003830 ORTHO05D004446 2.7e-92 344.7 1194 32.8
HanXRQChr17g0569161 Helianthus annuus HOM05D003830 ORTHO05D004446 2.3e-91 341.7 1198 32.8
Aa31sc109G20 Aethionema arabicum HOM05D003830 ORTHO05D004446 6.6e-91 340.1 1221 29.9
Hund06065 Selenicereus undatus HOM05D003830 ORTHO05D004446 6.6e-91 340.1 1276 32.9
DCAR_007014 Daucus carota HOM05D003830 ORTHO05D004446 7.3e-90 336.7 1224 30.4
Thhalv10006616m.g Eutrema salsugineum HOM05D003830 ORTHO05D004446 1.6e-89 335.5 1212 30.0
AT1G27850 Arabidopsis thaliana HOM05D003830 ORTHO05D004446 1.5e-87 328.9 1253 31.0
BolC5t31369H Brassica oleracea HOM05D003830 ORTHO05D004446 9.8e-87 326.2 1221 31.0
arahy.Tifrunner.gnm1.ann1.JB8DT0 Arachis hypogaea HOM05D003830 ORTHO05D004446 2.9e-86 324.7 1227 31.4
BcaC05g26779 Brassica carinata HOM05D003830 ORTHO05D004446 3.7e-86 324.3 1218 29.7
BraA09t39341Z Brassica rapa HOM05D003830 ORTHO05D004446 4.1e-85 320.9 1216 30.9
ECA233G0646 Erigeron canadensis HOM05D003830 ORTHO05D004446 9.2e-85 319.7 1126 33.0
C05p26490 Brassica napus HOM05D003830 ORTHO05D004446 8.6e-83 313.2 1242 30.6
A09p38310 Brassica napus HOM05D003830 ORTHO05D004446 2.5e-82 311.6 1243 30.2
AL1G41340 Arabidopsis lyrata HOM05D003830 ORTHO05D004446 4.3e-82 310.8 1226 30.3
SEGI_06277 Sequoiadendron giganteum HOM05D003830 ORTHO05D004446 1.6e-81 308.9 1319 28.9
Carub.0001s2631 Capsella rubella HOM05D003830 ORTHO05D004446 1.8e-80 305.4 1235 31.1
SalBow8G5205 Salvia bowleyana HOM05D003830 ORTHO05D004446 4.4e-79 300.8 1210 29.3
THA.LOC104825519 Tarenaya hassleriana HOM05D003830 ORTHO05D004446 2.4e-77 295.0 1212 30.7
C03p74620 Brassica napus HOM05D003830 ORTHO05D004446 4.1e-77 294.3 1212 30.2
A08p26030 Brassica napus HOM05D003830 ORTHO05D004446 7.1e-77 293.5 1229 29.6
BraA08t34553Z Brassica rapa HOM05D003830 ORTHO05D004446 1.2e-76 292.7 1207 31.3
Migut.E00239 Erythranthe guttata HOM05D003830 ORTHO05D004446 2.1e-76 292.0 1196 30.1
Lsat_1_v5_gn_8_150260 Lactuca sativa HOM05D003830 ORTHO05D004446 3.5e-76 291.2 1211 30.5
unitig_699.g19949 Utricularia gibba HOM05D003830 ORTHO05D004446 2.0e-71 275.4 808 34.2
Actinidia33257 Actinidia chinensis HOM05D003830 ORTHO05D004446 8.4e-70 270.0 997 31.0
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 1.1e-69 269.6 1176 29.6
BolC3t19710H Brassica oleracea HOM05D003830 ORTHO05D004446 1.9e-66 258.8 1212 31.3
Glyma.05G145400 Glycine max HOM05D003830 ORTHO05D004446 7.3e-66 256.9 913 30.8
Hma1.2p1_1340F.1_g276740 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 6.2e-65 253.8 410 51.0
Lalb_Chr11g0075691 Lupinus albus HOM05D003830 ORTHO05D004446 3.8e-62 244.6 411 47.9
unitig_747.g21131 Utricularia gibba HOM05D003830 ORTHO05D004446 2.5e-58 231.9 1068 28.6
Lsat_1_v5_gn_4_2860 Lactuca sativa HOM05D003830 ORTHO05D004446 2.0e-55 222.2 962 29.8
Actinidia30674 Actinidia chinensis HOM05D003830 ORTHO05D004446 6.4e-54 217.2 368 40.8
CDE04G3030 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 1.6e-52 212.6 380 44.2
PSO063G5558 Papaver somniferum HOM05D003830 ORTHO05D004446 2.3e-51 208.8 1224 26.0
SHI17938 Sapria himalayana HOM05D003830 ORTHO05D004446 3.4e-47 194.9 1231 25.8
Lalb_Chr11g0075701 Lupinus albus HOM05D003830 ORTHO05D004446 1.8e-40 172.6 804 27.6
CDE04G0036 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 6.9e-40 170.6 841 27.2
SGA_v2.0_scaffold87G27127 Striga asiatica HOM05D003830 ORTHO05D004446 6.9e-40 170.6 1188 27.1
CDE07G1392 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 3.8e-38 164.9 333 46.5
CDE07G0717 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 4.2e-37 161.4 809 27.9
Hma1.2p1_1340F.1_g276750 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 1.0e-35 156.8 801 29.5
CSS0021953 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 6.3e-33 147.5 265 50.6
Zm00001eb133580 Zea mays HOM05D003830 ORTHO05D004446 3.1e-32 145.2 781 28.2
DCAR_013711 Daucus carota HOM05D003830 ORTHO05D004446 8.5e-30 137.1 798 25.1
Actinidia30673 Actinidia chinensis HOM05D003830 ORTHO05D004446 6.3e-25 120.9 483 28.4
Cpa.g.c44110 Carica papaya HOM05D003830 ORTHO05D004446 9.1e-24 117.1 180 55.6
unitig_22.g6413 Utricularia gibba HOM05D003830 ORTHO05D004446 4.7e-20 104.8 453 30.9
Actinidia30675 Actinidia chinensis HOM05D003830 ORTHO05D004446 1.3e-17 96.7 83 63.9
Lj6C822T10 Lonicera japonica HOM05D003830 ORTHO05D004446 1.7e-17 96.3 133 45.1
Phvul.002G093600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 1.5e-15 89.7 168 42.9
Mapoly0001s0565 Marchantia polymorpha HOM05D003830 ORTHO05D004446 5.9e-15 87.8 524 32.4
BcaNung07311 Brassica carinata HOM05D003830 ORTHO05D004446 4.2e-13 81.6 644 24.7
ECA238G2369 Erigeron canadensis HOM05D001930 ORTHO05D001345 2.7e-12 79.0 501 30.3
CDE02G1696 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 1.0e-11 77.0 885 23.7
Nn2g13688 Nelumbo nucifera HOM05D001930 ORTHO05D001345 8.8e-11 73.9 537 27.7
FAN07G1399 Fragaria x ananassa HOM05D003830 ORTHO05D004446 7.4e-10 70.9 107 43.0
MBI07_g42070_MAGBIO Magnolia biondii HOM05D007981 ORTHO05D001345 8.2e-09 67.4 290 27.9
Psat3g128880 Pisum sativum HOM05D001930 ORTHO05D001345 1.4e-08 66.6 510 31.0
Actinidia13930 Actinidia chinensis HOM05D001930 ORTHO05D001345 4.1e-08 65.1 415 32.3
BcaC05g26601 Brassica carinata HOM05D003830 ORTHO05D004446 1.6e-07 63.2 281 27.4
Dinv23092 Davidia involucrata HOM05D001930 ORTHO05D001345 2.0e-07 62.8 528 28.4
CSS0031125 Camellia sinensis var. sinensis HOM05D001930 ORTHO05D001345 5.9e-07 61.2 508 28.0
MD07G1220000 Malus domestica HOM05D001930 ORTHO05D001345 7.7e-07 60.8 248 29.8
Os01g0141900 Oryza sativa ssp. japonica HOM05D001930 ORTHO05D001345 1.0e-06 60.5 248 31.9
MD01G1132400 Malus domestica HOM05D001930 ORTHO05D001345 1.3e-06 60.1 244 29.5
Sp4g22360 Schrenkiella parvula HOM05D001930 ORTHO05D001345 2.2e-06 59.3 234 31.2
Pp3c17_22500 Physcomitrium patens HOM05D003830 ORTHO05D004446 3.8e-06 58.5 200 34.5
Pp3c17_22550 Physcomitrium patens HOM05D003830 ORTHO05D004446 3.8e-06 58.5 200 34.5
Thhalv10016404m.g Eutrema salsugineum HOM05D001930 ORTHO05D001345 5.0e-06 58.2 258 29.1
FvH4_6g11590 Fragaria vesca HOM05D001930 ORTHO05D001345 5.0e-06 58.2 457 30.6
Oeu025644.2 Olea europaea HOM05D001930 ORTHO05D001345 5.0e-06 58.2 544 28.1
SalBow6G0604 Salvia bowleyana HOM05D001930 ORTHO05D001345 5.0e-06 58.2 487 28.3
CARHR135010 Cardamine hirsuta HOM05D001930 ORTHO05D001345 6.5e-06 57.8 245 29.8
Ah.10g036510 Amaranthus hybridus HOM05D001930 ORTHO05D001345 8.5e-06 57.4 212 30.2
MSTRG.27324 Avicennia marina HOM05D001930 ORTHO05D001345 8.5e-06 57.4 524 28.8
Prupe.6G275700 Prunus persica HOM05D001930 ORTHO05D001345 8.5e-06 57.4 529 30.1
SalBow2G2157 Salvia bowleyana HOM05D007981 ORTHO05D001345 8.5e-06 57.4 155 32.3


User provided reference genes

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