Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 2.4e-101 372.1 178 100.0
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.9e-58 229.6 171 64.3
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.3e-57 226.9 166 63.9
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.8e-56 223.0 166 63.9
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 5.3e-56 221.5 166 63.3
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.2e-55 220.3 167 62.3
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 5.8e-55 218.0 167 62.3
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 9.9e-55 217.2 166 59.6
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 9.9e-55 217.2 166 63.3
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.7e-54 216.5 166 59.6
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.9e-54 215.7 167 61.1
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 4.9e-54 214.9 166 58.4
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 4.9e-54 214.9 166 60.8
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 6.4e-54 214.5 166 60.8
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 8.4e-54 214.2 166 59.6
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.4e-53 213.4 166 59.6
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.9e-53 213.0 166 60.2
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.9e-53 213.0 166 59.0
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 2.4e-53 212.6 166 58.4
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 3.2e-53 212.2 166 57.8
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.2e-53 211.8 167 60.5
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 7.1e-53 211.1 167 61.1
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 7.1e-53 211.1 166 57.8
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 7.1e-53 211.1 166 59.0
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 7.1e-53 211.1 166 57.8
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 7.1e-53 211.1 166 59.0
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 9.3e-53 210.7 167 60.5
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.3e-53 210.7 166 56.6
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 1.2e-52 210.3 167 60.5
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 1.6e-52 209.9 167 60.5
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 1.6e-52 209.9 167 60.5
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.6e-52 209.9 166 57.2
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.6e-52 209.9 166 57.2
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 2.1e-52 209.5 166 57.2
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.7e-52 209.1 166 59.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 4.6e-52 208.4 166 60.8
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.6e-52 208.4 166 56.0
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 7.9e-52 207.6 166 58.4
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.0e-51 207.2 166 57.8
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.0e-51 207.2 166 58.4
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.0e-51 207.2 166 57.8
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.0e-51 207.2 167 59.9
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.3e-51 206.8 166 58.4
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.3e-51 206.8 166 58.4
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.8e-51 206.5 167 59.3
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.8e-51 206.5 167 59.3
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 1.8e-51 206.5 166 60.2
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 1.8e-51 206.5 166 60.2
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.8e-51 206.5 166 56.6
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 2.3e-51 206.1 166 57.8
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 2.3e-51 206.1 173 57.8
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 3.0e-51 205.7 167 59.3
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 3.9e-51 205.3 167 58.7
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 5.1e-51 204.9 167 58.7
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 5.1e-51 204.9 166 59.0
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 5.1e-51 204.9 166 56.6
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 5.1e-51 204.9 166 58.4
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 6.7e-51 204.5 167 59.3
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.1e-50 203.8 167 59.3
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.1e-50 203.8 166 59.6
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.9e-50 203.0 166 56.6
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 2.5e-50 202.6 166 56.6
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 3.3e-50 202.2 166 57.2
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.3e-50 202.2 166 55.4
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 4.3e-50 201.8 166 56.6
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 4.3e-50 201.8 177 57.1
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 5.6e-50 201.4 165 58.8
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 7.4e-50 201.1 161 60.2
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 9.6e-50 200.7 165 57.0
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 1.3e-49 200.3 166 54.8
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.6e-49 199.9 166 56.6
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.1e-49 199.5 166 58.4
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.1e-49 199.5 166 56.0
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 3.7e-49 198.7 166 53.6
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 4.8e-49 198.4 166 54.8
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.1e-48 197.2 166 58.4
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.1e-48 197.2 164 54.3
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.4e-48 196.1 166 56.0
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.1e-48 195.7 166 55.4
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 4.0e-48 195.3 166 56.6
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.2e-47 193.7 166 54.8
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.2e-47 193.7 166 54.8
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.2e-47 193.7 166 54.8
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.2e-47 193.7 168 57.7
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.5e-47 193.4 169 53.3
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 2.0e-47 193.0 164 53.7
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 3.4e-47 192.2 166 53.6
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 4.5e-47 191.8 202 49.0
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 4.5e-47 191.8 188 50.0
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 5.8e-47 191.4 166 57.2
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.6e-47 191.0 166 53.6
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.6e-47 191.0 166 53.6
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 9.9e-47 190.7 166 53.6
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.3e-46 190.3 166 53.6
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.4e-45 186.8 167 55.7
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.4e-45 186.8 166 55.4
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.4e-45 186.8 166 55.4
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.9e-45 186.4 189 48.1
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.4e-45 186.0 166 55.4
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 4.2e-45 185.3 170 52.4
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 4.2e-45 185.3 218 44.0
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 7.9e-44 181.0 166 54.8
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.8e-43 179.9 179 49.2
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 2.5e-42 176.0 188 48.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.8e-41 172.6 166 48.8
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.8e-40 169.9 181 44.2
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 4.0e-40 168.7 136 58.8
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 6.9e-40 167.9 127 59.8
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.6e-39 166.0 126 61.1
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.0e-38 164.1 135 60.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.3e-38 163.7 117 65.0
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.7e-38 163.3 166 48.8
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 3.8e-38 162.2 166 49.4
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 4.9e-38 161.8 130 56.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.0e-35 154.1 175 44.0
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 3.9e-35 152.1 128 56.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 8.7e-35 151.0 176 46.0
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 8.2e-33 144.4 171 42.7
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.2e-31 140.6 164 44.5
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.2e-31 140.6 171 42.7
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.6e-31 139.4 166 42.8
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 7.6e-31 137.9 109 62.4
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.3e-30 137.1 170 43.5
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 2.2e-30 136.3 163 43.6
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 8.5e-30 134.4 118 56.8
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 6.1e-28 128.3 128 47.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.1e-28 128.3 134 47.8
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.9e-28 127.9 133 48.1
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 3.0e-27 125.9 96 62.5
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 3.0e-27 125.9 96 62.5
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.9e-27 125.6 150 45.3
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 3.9e-27 125.6 166 42.8
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.5e-26 122.9 152 42.1
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.3e-26 122.5 130 46.9
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.8e-24 116.7 131 48.1
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 5.0e-22 108.6 97 55.7
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.4e-19 100.5 159 36.5
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 1.8e-19 100.1 96 54.2
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 6.7e-19 98.2 182 37.4
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.0e-18 96.7 159 35.8
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 4.4e-18 95.5 79 55.7
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.7e-17 92.4 133 37.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 5.3e-16 88.6 92 50.0
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.9e-16 88.2 96 42.7
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 7.2e-13 78.2 114 36.8
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.2e-11 72.0 72 50.0
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.7e-11 71.6 74 48.6
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.1e-10 70.9 68 51.5
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.4e-10 68.2 57 54.4
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.2e-09 66.6 169 31.4
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.3e-09 65.1 72 47.2
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-08 63.9 57 52.6
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-08 63.9 72 45.8
COL.COLO4_30599 Corchorus olitorius HOM05D004267 ORTHO05D044750 2.6e-07 59.7 134 30.6
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 2.9e-06 56.2 122 32.8


User provided reference genes

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