Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.8e-160 569.3 305 100.0
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 7.6e-87 324.7 274 63.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.3e-86 323.9 306 61.1
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 2.9e-86 322.8 300 57.0
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.1e-85 320.9 306 54.6
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.7e-83 313.5 310 56.1
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 3.0e-83 312.8 295 55.9
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 5.1e-83 312.0 304 53.6
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.1e-82 310.8 305 57.0
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.5e-82 310.5 295 56.9
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.5e-82 310.5 295 56.9
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.5e-82 310.5 306 53.3
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 5.6e-82 308.5 296 56.4
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 7.3e-82 308.1 303 54.8
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.2e-81 307.4 282 59.6
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.6e-81 307.0 300 51.7
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.1e-81 306.6 295 55.9
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.8e-81 306.2 310 54.2
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.8e-81 306.2 297 53.5
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.8e-81 306.2 305 56.1
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 3.6e-81 305.8 304 53.0
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 4.7e-81 305.4 306 56.2
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 4.7e-81 305.4 311 56.3
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.1e-80 304.3 298 57.0
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.4e-80 303.9 297 53.2
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.8e-80 303.5 308 54.9
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.8e-80 303.5 306 54.6
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 2.4e-80 303.1 310 53.2
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.1e-80 302.8 310 55.5
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 4.0e-80 302.4 297 54.5
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.9e-80 301.6 310 55.5
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.9e-80 301.6 310 54.8
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.9e-80 301.6 310 54.8
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 8.9e-80 301.2 300 55.7
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 1.5e-79 300.4 303 55.1
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 3.4e-79 299.3 303 54.5
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 3.4e-79 299.3 294 54.8
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 4.4e-79 298.9 303 51.8
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 7.6e-79 298.1 311 54.0
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 7.6e-79 298.1 311 54.0
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.6e-79 298.1 304 55.3
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 9.9e-79 297.7 301 55.8
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-78 297.4 297 55.2
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-78 297.4 297 55.2
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.7e-78 297.0 307 51.1
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 1.7e-78 297.0 302 54.0
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.7e-78 297.0 294 54.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.2e-78 296.6 303 55.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-77 293.9 309 54.0
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 3.2e-77 292.7 294 55.1
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 4.2e-77 292.4 308 51.9
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 5.4e-77 292.0 304 52.3
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 1.2e-76 290.8 268 59.7
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.6e-76 290.4 294 54.8
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 2.7e-76 289.7 310 51.6
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 2.7e-76 289.7 297 53.9
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 2.7e-76 289.7 282 54.6
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.5e-76 289.3 305 54.1
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 3.5e-76 289.3 294 54.8
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 4.6e-76 288.9 282 55.0
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 6.0e-76 288.5 300 52.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 6.0e-76 288.5 298 54.0
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 6.0e-76 288.5 308 51.6
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.3e-75 287.3 308 52.6
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.3e-75 286.6 302 52.6
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 3.0e-75 286.2 320 48.4
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 3.9e-75 285.8 294 54.1
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 6.6e-75 285.0 295 53.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 6.6e-75 285.0 303 51.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 8.7e-75 284.6 302 52.3
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.1e-74 284.3 279 55.6
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 5.6e-74 282.0 302 53.6
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 5.6e-74 282.0 279 52.3
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 7.3e-74 281.6 297 50.8
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 9.6e-74 281.2 283 56.5
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.3e-73 280.8 301 51.5
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.8e-73 279.6 298 56.0
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 4.8e-73 278.9 214 60.3
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 8.1e-73 278.1 284 54.2
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.1e-72 277.7 303 51.2
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.8e-72 276.9 298 50.3
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 2.4e-72 276.6 315 51.4
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 4.0e-72 275.8 219 60.3
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 6.9e-72 275.0 302 52.3
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 9.0e-72 274.6 301 53.5
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 9.0e-72 274.6 309 50.2
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.2e-71 274.2 215 61.4
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 4.5e-71 272.3 310 50.6
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.3e-70 270.8 306 50.0
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 9.3e-69 264.6 309 50.2
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.2e-68 264.2 302 47.4
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.6e-68 263.8 305 52.1
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.1e-68 263.5 277 50.2
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 2.1e-68 263.5 307 46.9
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 3.5e-68 262.7 301 49.8
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 3.5e-68 262.7 300 51.0
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.0e-67 261.2 269 53.2
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.3e-67 260.0 283 53.0
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 5.1e-67 258.8 303 49.8
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 6.7e-67 258.5 300 50.0
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.5e-66 257.3 297 47.1
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 1.9e-66 256.9 305 50.5
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.9e-66 256.9 306 45.8
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 1.9e-66 256.9 264 53.8
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.9e-66 256.9 311 49.2
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 4.3e-66 255.8 301 51.2
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.3e-65 254.2 309 48.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.8e-65 253.1 306 45.1
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 5.3e-64 248.8 307 47.6
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 2.0e-63 246.9 304 49.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 4.5e-63 245.7 301 49.8
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.3e-62 244.2 298 47.3
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 2.2e-62 243.4 335 44.8
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-61 240.4 300 49.3
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 3.2e-61 239.6 270 51.1
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.2e-60 237.7 294 49.3
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 3.3e-58 229.6 217 52.1
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 4.3e-58 229.2 311 46.0
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 5.6e-58 228.8 307 45.0
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.3e-57 227.6 291 48.5
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.5e-53 213.4 228 55.7
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.3e-51 207.6 209 49.8
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 5.1e-51 205.7 236 47.0
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 3.8e-46 189.5 183 53.0
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.1e-45 188.0 307 41.4
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.2e-45 186.4 294 40.8
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 2.6e-39 166.8 289 32.9
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 3.1e-32 143.3 96 68.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.0e-27 126.7 198 38.4
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 3.9e-27 126.3 282 34.4
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.5e-26 124.4 142 49.3
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 2.2e-25 120.6 207 30.4
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 1.0e-22 111.7 180 35.6
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.7e-22 110.9 183 35.0
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 8.8e-19 98.6 65 61.5
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.0e-18 97.4 132 45.5
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.0e-18 97.4 132 45.5
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 3.1e-16 90.1 110 45.5
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 5.3e-16 89.4 62 64.5
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.0e-14 85.1 68 51.5
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.9e-13 80.9 52 67.3
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.1e-12 77.4 119 42.9
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.0e-11 73.2 45 66.7
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 6.8e-11 72.4 61 55.7
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.8e-09 67.0 50 56.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 6.3e-09 65.9 95 52.6
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 1.8e-08 64.3 110 45.5
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.4e-08 63.9 53 58.5
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 4.5e-07 59.7 54 53.7
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 2.9e-06 57.0 53 52.8


User provided reference genes

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