Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 6.7e-273 943.3 457 100.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.1e-259 899.4 452 96.2
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.8e-129 466.8 461 52.3
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 5.4e-129 465.3 462 50.4
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.7e-128 463.0 463 50.8
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 3.5e-128 462.6 462 51.7
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.5e-128 462.2 463 52.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 7.8e-128 461.5 461 50.1
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.3e-127 459.9 463 51.6
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.6e-127 458.4 465 50.5
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.5e-126 457.2 461 49.7
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.5e-126 456.4 463 51.6
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 7.3e-126 454.9 463 51.0
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 9.5e-126 454.5 463 51.0
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.6e-125 453.8 464 51.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.8e-124 450.3 460 50.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.8e-124 450.3 461 49.9
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.8e-124 450.3 463 51.2
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 3.0e-124 449.5 463 50.8
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 2.0e-123 446.8 463 50.3
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.6e-123 446.4 463 50.1
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 5.7e-123 445.3 447 51.5
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.3e-122 444.1 460 49.6
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.7e-122 442.6 463 49.9
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.4e-121 440.7 463 49.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-121 440.3 461 48.8
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.1e-121 439.1 462 48.7
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 5.4e-121 438.7 463 49.0
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 5.4e-121 438.7 463 50.8
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 7.0e-121 438.3 493 48.3
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.2e-120 437.6 462 49.6
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 2.0e-120 436.8 463 49.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 5.9e-120 435.3 465 49.0
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 5.9e-120 435.3 463 46.7
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 5.9e-120 435.3 464 49.6
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 7.8e-120 434.9 463 48.8
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 6.6e-119 431.8 465 48.0
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 6.6e-119 431.8 463 49.0
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 8.6e-119 431.4 461 47.5
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.5e-118 430.6 463 50.1
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 1.9e-118 430.3 465 48.0
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.3e-118 429.5 464 49.4
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 4.3e-118 429.1 463 48.4
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 7.3e-118 428.3 463 47.9
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.8e-117 426.4 463 47.3
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.6e-117 426.0 463 50.1
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.7e-117 425.6 463 47.9
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 6.2e-117 425.2 471 48.0
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 6.2e-117 425.2 460 47.2
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 6.2e-117 425.2 464 50.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.1e-116 424.5 462 49.1
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.1e-116 424.5 463 47.5
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.3e-116 423.3 468 47.4
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 4.0e-116 422.5 465 47.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 6.8e-116 421.8 463 48.2
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.2e-115 421.0 465 48.0
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.2e-115 421.0 463 47.7
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.0e-115 420.2 473 45.9
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 5.8e-115 418.7 463 47.9
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.8e-115 418.7 464 49.6
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.7e-114 417.2 461 47.5
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 6.4e-114 415.2 464 49.4
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.1e-113 414.5 478 47.1
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 1.4e-113 414.1 464 47.0
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 3.2e-113 412.9 508 44.1
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 5.4e-113 412.1 461 47.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 7.0e-113 411.8 463 45.8
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 9.2e-113 411.4 463 47.1
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 9.2e-113 411.4 465 47.3
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.6e-112 410.6 464 46.8
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.6e-112 410.6 464 46.8
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.0e-111 407.9 464 47.0
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.3e-111 407.5 461 46.4
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.3e-111 406.8 463 46.0
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 6.6e-111 405.2 465 47.3
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 8.6e-111 404.8 457 47.9
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-110 404.4 436 48.6
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 3.3e-110 402.9 464 47.0
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 5.6e-110 402.1 463 47.5
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 2.1e-109 400.2 464 46.3
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 2.1e-109 400.2 464 46.3
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 6.2e-109 398.7 464 47.0
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 3.1e-108 396.4 461 47.5
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.6e-107 393.3 463 46.2
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.7e-106 390.6 461 46.6
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.7e-106 389.4 465 46.5
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 3.7e-106 389.4 436 46.3
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 5.4e-105 385.6 399 50.6
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.0e-104 382.1 462 46.1
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 7.8e-104 381.7 398 49.2
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 3.0e-103 379.8 459 46.4
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.1e-102 377.9 384 52.3
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.6e-101 374.0 420 47.1
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-100 371.3 435 45.7
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.4e-100 370.9 466 45.1
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.1e-100 369.8 384 51.8
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 7.6e-99 365.2 459 44.4
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 4.9e-98 362.5 401 45.9
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 4.9e-98 362.5 460 44.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.1e-97 361.3 455 45.1
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 7.8e-96 355.1 460 42.4
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.2e-93 347.8 432 44.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.6e-93 346.3 400 45.0
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.8e-92 344.0 404 45.5
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.5e-91 340.9 464 42.0
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.5e-91 340.9 464 42.0
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.5e-91 340.9 464 42.0
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.6e-91 340.1 382 49.7
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.3e-87 327.0 460 41.1
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 2.1e-85 320.5 454 40.5
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 4.8e-85 319.3 460 40.4
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.9e-82 309.3 464 40.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 3.2e-81 306.6 469 39.2
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 7.9e-80 302.0 332 49.7
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 5.1e-79 299.3 442 38.5
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.3e-78 296.2 454 37.7
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.8e-77 293.5 436 39.4
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.1e-76 290.0 461 39.3
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.0e-75 287.3 326 44.8
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 9.9e-75 285.0 327 45.6
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.6e-67 260.4 465 37.2
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 7.1e-65 252.3 261 51.7
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.1e-64 250.8 372 40.6
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.3e-61 241.5 244 49.2
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.2e-56 224.9 465 34.6
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.4e-52 210.7 398 36.4
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 3.4e-51 206.8 332 37.0
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.2e-50 204.1 249 44.2
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 7.2e-49 199.1 531 29.0
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-46 191.8 202 50.0
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.5e-43 181.4 494 30.4
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.7e-39 166.0 146 50.0
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 4.2e-33 146.7 161 49.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.2e-29 134.4 503 27.6
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 4.1e-28 130.2 137 49.6
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-20 105.5 102 49.0
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.5e-14 85.1 131 39.7
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.5e-14 85.1 355 25.1
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 9.8e-14 82.4 72 55.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 1.7e-13 81.6 62 56.5


User provided reference genes

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