Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.5e-118 429.5 216 100.0
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.9e-80 301.6 209 70.8
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.4e-79 300.1 209 70.3
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.1e-79 298.9 205 70.7
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 4.1e-79 298.5 201 69.7
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 7.0e-79 297.7 205 70.7
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.2e-78 297.0 198 71.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.7e-78 295.8 197 70.6
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 3.5e-78 295.4 198 71.2
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.5e-78 295.4 210 68.6
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 4.5e-78 295.0 198 70.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 5.9e-78 294.7 198 71.2
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 5.9e-78 294.7 198 70.7
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.9e-78 294.7 208 66.3
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.7e-78 294.3 198 71.2
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 7.7e-78 294.3 208 68.8
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.0e-77 293.9 198 70.7
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.0e-77 293.9 198 71.2
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.0e-77 293.9 208 68.8
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.3e-77 293.5 201 69.2
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.7e-77 293.1 198 69.7
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.7e-77 293.1 198 71.2
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 2.3e-77 292.7 196 70.4
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.9e-77 292.4 197 70.1
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.8e-77 292.0 198 70.7
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.0e-77 291.6 198 70.7
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 5.0e-77 291.6 198 71.7
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 6.6e-77 291.2 201 69.2
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 6.6e-77 291.2 197 70.1
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 6.6e-77 291.2 198 69.2
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.1e-76 290.4 198 70.7
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.1e-76 290.4 198 71.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.5e-76 290.0 210 65.2
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.5e-76 290.0 198 68.2
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.5e-76 289.3 198 70.7
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 2.5e-76 289.3 208 65.9
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.5e-76 289.3 208 65.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 3.3e-76 288.9 214 65.9
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.3e-76 288.9 208 66.8
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 3.3e-76 288.9 208 67.8
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 3.3e-76 288.9 198 66.7
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.3e-76 288.5 198 70.7
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 4.3e-76 288.5 198 70.7
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 4.3e-76 288.5 206 67.5
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 4.3e-76 288.5 198 70.7
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.6e-76 288.1 208 66.3
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 5.6e-76 288.1 198 69.2
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 7.3e-76 287.7 198 68.7
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 7.3e-76 287.7 198 67.7
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 9.5e-76 287.3 198 70.2
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 9.5e-76 287.3 206 66.5
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 9.5e-76 287.3 198 69.7
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 9.5e-76 287.3 198 69.7
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 9.5e-76 287.3 198 69.2
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.6e-75 286.6 198 70.2
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.6e-75 286.6 198 69.7
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.6e-75 286.6 198 68.7
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.1e-75 286.2 198 70.7
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.8e-75 285.8 198 69.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 3.6e-75 285.4 198 69.2
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 3.6e-75 285.4 198 69.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 4.7e-75 285.0 198 69.2
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 4.7e-75 285.0 197 70.1
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 6.1e-75 284.6 198 69.2
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 6.1e-75 284.6 198 69.7
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.0e-74 283.9 198 68.7
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.0e-74 283.9 208 65.4
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.4e-74 283.5 198 69.2
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-74 283.1 206 66.5
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.8e-74 283.1 208 65.9
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-74 282.7 206 66.5
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 3.0e-74 282.3 198 67.2
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 4.0e-74 282.0 208 65.4
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 5.2e-74 281.6 218 63.3
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 5.2e-74 281.6 208 65.4
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.2e-74 281.6 199 67.8
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 6.8e-74 281.2 198 67.2
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 6.8e-74 281.2 207 66.2
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 8.9e-74 280.8 206 66.0
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 8.9e-74 280.8 198 67.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.2e-73 280.4 222 63.1
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.2e-73 280.4 198 67.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.5e-73 280.0 198 66.7
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.5e-73 280.0 201 68.2
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.0e-73 279.6 198 67.7
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.4e-73 278.9 208 65.4
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 4.4e-73 278.5 198 67.7
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 4.4e-73 278.5 198 65.2
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 5.7e-73 278.1 208 65.9
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 9.8e-73 277.3 198 65.7
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 9.8e-73 277.3 208 63.5
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 9.8e-73 277.3 208 65.4
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 9.8e-73 277.3 208 65.4
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.3e-72 276.9 198 66.7
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.2e-72 276.2 198 65.2
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.9e-72 275.8 198 65.2
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 3.7e-72 275.4 208 64.9
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.7e-72 275.4 208 67.3
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 6.4e-72 274.6 207 64.7
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 6.4e-72 274.6 210 64.8
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-71 273.9 186 71.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.1e-71 273.9 208 63.5
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.1e-71 273.9 198 64.1
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.1e-71 273.9 198 63.6
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.8e-71 273.1 198 68.2
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.8e-71 273.1 208 63.0
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 2.4e-71 272.7 208 63.9
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 5.4e-71 271.6 187 69.5
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.4e-71 271.6 208 63.5
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 7.0e-71 271.2 208 62.0
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.5e-70 268.9 188 67.0
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 4.6e-70 268.5 190 67.4
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 5.9e-70 268.1 211 62.1
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 8.6e-69 264.2 188 67.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.5e-68 262.7 186 67.7
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.3e-68 261.9 198 64.6
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.6e-68 261.5 198 65.2
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 7.3e-68 261.2 193 65.8
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 7.3e-68 261.2 193 65.8
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 9.5e-68 260.8 208 61.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.2e-67 260.4 213 59.6
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.1e-67 259.6 209 62.2
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 6.2e-67 258.1 188 67.0
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.8e-66 256.5 188 63.8
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.2e-66 255.0 208 58.7
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.0e-65 253.1 234 56.8
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.0e-65 253.1 190 62.6
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 9.8e-65 250.8 186 65.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.7e-64 250.0 198 62.1
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 3.2e-63 245.7 188 62.8
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.1e-63 245.4 191 62.3
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 6.0e-62 241.5 220 55.5
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.3e-60 235.3 208 61.1
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.6e-59 232.3 205 58.5
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 8.1e-59 231.1 208 57.2
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.4e-57 225.3 208 57.2
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 5.8e-57 224.9 198 58.1
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 7.5e-57 224.6 163 66.3
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.3e-56 223.8 206 56.3
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 1.7e-56 223.4 198 57.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 9.2e-55 217.6 159 65.4
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 6.0e-54 214.9 212 53.8
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 5.1e-53 211.8 199 53.8
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.6e-53 211.5 199 54.3
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.5e-52 210.3 180 60.0
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 4.3e-52 208.8 143 68.5
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.6e-51 205.7 216 50.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 6.8e-50 201.4 188 56.4
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 5.8e-49 198.4 198 50.0
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 7.6e-49 198.0 144 65.3
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.2e-48 196.4 170 63.5
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 4.1e-47 192.2 208 49.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 5.1e-45 185.3 134 65.7
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.6e-44 181.8 205 48.3
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 8.4e-40 167.9 153 52.9
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.2e-39 165.6 143 58.0
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.3e-37 159.8 235 42.6
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 9.6e-36 154.5 105 76.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.6e-35 153.7 208 49.5
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 6.2e-35 151.8 191 45.5
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 5.3e-34 148.7 157 51.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-32 144.1 99 69.7
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.6e-27 127.1 107 67.3
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.4e-25 119.4 156 41.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.9e-25 117.9 114 55.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.7e-22 109.8 89 53.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 3.0e-21 106.3 78 65.4
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.5e-20 104.0 95 52.6
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 9.0e-18 94.7 64 67.2
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.7e-16 90.5 68 66.2
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 5.1e-13 79.0 142 35.9
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.1e-07 61.2 66 51.5
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.9e-07 60.5 40 60.0
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 5.5e-07 58.9 55 50.9
Cre03.g204751 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D043992 6.1e-06 55.5 76 42.1
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 6.1e-06 55.5 42 59.5


User provided reference genes

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