Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.4e-152 543.1 310 100.0
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.5e-146 522.3 353 87.8
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 1.1e-109 400.6 350 66.6
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 4.2e-109 398.7 343 68.8
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 1.3e-105 387.1 347 66.3
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.7e-102 376.7 340 66.2
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.3e-99 367.1 340 58.8
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.8e-99 366.7 334 60.2
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 3.0e-99 365.9 340 58.8
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 3.9e-99 365.5 347 58.8
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 6.7e-99 364.8 337 59.1
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 8.7e-99 364.4 337 59.1
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 3.3e-98 362.5 334 59.0
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.7e-97 360.1 334 65.3
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 2.4e-96 356.3 338 63.3
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 4.1e-96 355.5 334 58.7
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 9.1e-96 354.4 339 57.8
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 9.1e-96 354.4 354 55.9
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.2e-95 354.0 354 55.9
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 4.5e-95 352.1 340 56.5
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 5.9e-95 351.7 334 59.6
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 7.7e-95 351.3 346 62.4
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.0e-94 350.9 341 61.0
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.3e-94 350.5 338 62.4
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 2.2e-94 349.7 355 55.8
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 2.2e-94 349.7 343 58.6
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 2.9e-94 349.4 338 62.4
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 8.5e-94 347.8 339 61.9
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 8.5e-94 347.8 353 60.3
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.1e-93 347.4 332 63.0
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.1e-93 347.4 334 59.6
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.1e-93 347.4 341 57.8
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 1.4e-93 347.1 335 58.2
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 1.4e-93 347.1 340 59.1
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 3.2e-93 345.9 349 55.9
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 4.2e-93 345.5 349 55.9
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 9.4e-93 344.4 350 59.7
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.2e-92 344.0 340 57.4
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 2.7e-92 342.8 349 57.3
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.6e-92 342.4 344 56.4
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 4.7e-92 342.0 339 61.4
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 5.1e-91 338.6 337 55.2
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 1.1e-90 337.4 332 59.9
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.1e-90 337.4 334 61.4
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 2.6e-90 336.3 335 57.6
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.4e-90 335.5 334 61.1
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 5.7e-90 335.1 324 56.8
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 9.7e-90 334.3 350 60.3
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.7e-89 333.6 338 55.6
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 4.8e-89 332.0 350 59.4
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 4.8e-89 332.0 337 60.8
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 1.4e-88 330.5 332 56.0
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.8e-88 330.1 335 54.3
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 4.1e-88 328.9 344 59.6
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.9e-88 328.2 334 61.1
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-87 326.6 329 55.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.0e-87 326.6 329 55.6
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 3.4e-87 325.9 339 54.6
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 4.5e-87 325.5 339 59.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 5.9e-87 325.1 339 54.3
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.3e-86 323.9 351 53.3
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.3e-86 323.9 351 52.7
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 1.7e-86 323.6 348 58.6
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.2e-86 323.2 324 56.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.9e-86 322.8 345 53.3
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 6.5e-86 321.6 379 51.2
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.1e-85 320.9 321 61.4
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 2.5e-85 319.7 345 59.1
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 3.2e-85 319.3 349 57.3
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 9.4e-85 317.8 329 53.5
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.2e-84 317.4 349 57.0
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 1.6e-84 317.0 349 57.9
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.0e-83 314.3 341 52.5
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 3.0e-83 312.8 413 47.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.9e-83 312.4 341 52.8
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 3.9e-83 312.4 341 52.8
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 2.0e-82 310.1 338 52.4
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 4.4e-82 308.9 329 52.9
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 7.4e-82 308.1 332 53.0
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.3e-81 307.4 337 52.2
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.3e-81 307.4 343 51.9
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 8.2e-81 304.7 372 50.0
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.8e-80 303.5 298 56.4
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 5.3e-80 302.0 339 51.0
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.2e-79 300.8 324 57.7
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.0e-79 300.1 346 50.9
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.0e-79 300.1 306 62.7
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 7.7e-79 298.1 339 56.6
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 2.9e-78 296.2 312 54.8
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 4.2e-77 292.4 333 51.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 5.5e-77 292.0 335 56.7
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 3.6e-76 289.3 275 57.1
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 8.0e-76 288.1 310 59.4
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.2e-74 284.3 340 46.5
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 2.0e-74 283.5 332 54.8
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 2.6e-74 283.1 340 50.0
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 3.7e-73 279.3 294 60.5
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 1.4e-72 277.3 370 51.9
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 7.0e-72 275.0 387 50.4
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 9.1e-72 274.6 271 63.1
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.3e-70 270.8 283 60.8
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 6.5e-70 268.5 295 52.9
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.5e-69 267.3 292 53.1
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.9e-69 266.9 330 54.5
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 1.0e-67 261.2 395 46.6
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.8e-64 250.4 428 40.4
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 6.5e-62 241.9 242 55.4
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.5e-61 240.7 400 39.8
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.4e-59 234.2 226 55.8
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 8.9e-59 231.5 186 68.3
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 7.5e-58 228.4 245 60.4
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.3e-57 227.6 207 62.8
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.8e-56 223.8 191 63.4
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 2.4e-56 223.4 184 71.2
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.3e-54 217.6 235 53.2
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 8.0e-52 208.4 324 40.4
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.0e-50 203.8 328 39.9
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 5.8e-50 202.2 408 37.3
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.5e-45 186.8 330 37.6
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.2e-44 184.5 303 41.6
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 5.2e-43 179.1 236 49.2
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 5.4e-40 169.1 136 68.4
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 2.7e-39 166.8 160 68.8
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.0e-38 164.9 201 48.3
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 6.6e-38 162.2 231 41.6
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.2e-36 157.9 213 44.1
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.6e-36 156.4 118 65.3
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 3.6e-36 156.4 165 55.2
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 3.7e-33 146.4 112 60.7
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.6e-31 139.4 142 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 3.3e-29 133.3 282 33.3
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 8.9e-27 125.2 121 75.2
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 7.3e-21 105.5 98 62.2
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.1e-20 104.0 97 60.8
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 2.9e-17 93.6 183 32.8
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 4.2e-16 89.7 106 68.9
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 8.7e-14 82.0 78 55.1
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 9.6e-13 78.6 49 79.6
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 3.6e-12 76.6 90 46.7
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 3.8e-09 66.6 87 47.1
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.1e-08 65.1 180 30.6


User provided reference genes

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