Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.0e-125 451.8 225 100.0
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 7.0e-106 387.5 223 83.9
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 5.9e-105 384.4 223 83.4
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.9e-105 384.4 223 83.4
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 1.3e-104 383.3 222 82.9
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 1.7e-104 382.9 223 83.0
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.7e-104 382.9 223 83.0
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.7e-104 382.9 223 82.5
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.9e-104 382.1 223 82.5
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.9e-104 382.1 223 82.5
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 2.9e-104 382.1 223 83.0
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 2.9e-104 382.1 223 84.3
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 2.9e-104 382.1 223 82.5
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 3.8e-104 381.7 223 83.4
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 1.1e-103 380.2 226 83.2
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.1e-103 380.2 231 81.0
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 3.3e-103 378.6 222 82.4
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 4.2e-103 378.3 223 82.1
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 5.6e-103 377.9 223 81.6
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 7.2e-103 377.5 219 83.1
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 2.1e-102 375.9 222 82.9
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 8.0e-102 374.0 222 81.1
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.0e-102 374.0 227 80.6
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 8.0e-102 374.0 221 82.4
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.0e-101 373.6 222 79.7
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.4e-101 373.2 223 79.4
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.4e-101 373.2 223 79.4
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 2.3e-101 372.5 223 80.3
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 2.3e-101 372.5 223 80.3
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 3.0e-101 372.1 223 81.2
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 4.0e-101 371.7 223 80.3
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 5.2e-101 371.3 221 82.4
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 6.8e-101 370.9 221 81.9
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 6.8e-101 370.9 223 81.2
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.5e-100 369.8 219 81.3
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 2.6e-100 369.0 223 78.9
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 3.4e-100 368.6 219 79.9
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 9.8e-100 367.1 223 80.3
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.3e-99 366.7 223 78.9
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 1.3e-99 366.7 221 80.1
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 1.3e-99 366.7 222 77.9
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 1.3e-99 366.7 221 81.9
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.7e-99 366.3 223 80.3
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 1.7e-99 366.3 223 80.3
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 3.7e-99 365.2 237 76.4
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 6.4e-99 364.4 222 78.4
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 6.4e-99 364.4 223 78.0
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 6.4e-99 364.4 223 78.5
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 8.3e-99 364.0 221 79.6
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 1.1e-98 363.6 222 77.0
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.1e-98 363.6 223 77.6
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.8e-98 362.8 221 79.2
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.8e-98 362.8 221 79.2
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 7.0e-98 360.9 223 78.5
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.2e-97 360.1 221 78.3
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 1.6e-97 359.8 224 78.6
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 2.7e-97 359.0 222 76.6
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 2.7e-97 359.0 222 77.5
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 2.7e-97 359.0 221 78.3
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 3.5e-97 358.6 223 78.9
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 3.5e-97 358.6 223 77.6
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 4.6e-97 358.2 223 77.1
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 4.6e-97 358.2 223 77.1
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 4.6e-97 358.2 222 77.5
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 5.9e-97 357.8 222 75.7
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 5.9e-97 357.8 223 78.5
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 7.8e-97 357.5 218 78.4
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 7.8e-97 357.5 224 77.7
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 7.8e-97 357.5 223 78.0
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 7.8e-97 357.5 222 77.0
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 2.9e-96 355.5 223 77.6
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 3.9e-96 355.1 223 76.7
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 3.9e-96 355.1 223 75.8
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 3.9e-96 355.1 223 77.1
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 5.0e-96 354.8 224 77.2
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 5.0e-96 354.8 219 78.5
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 6.6e-96 354.4 224 76.8
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 8.6e-96 354.0 222 75.2
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 1.1e-95 353.6 224 76.8
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 1.5e-95 353.2 223 77.1
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 1.5e-95 353.2 224 77.2
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 3.3e-95 352.1 223 76.7
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 3.3e-95 352.1 222 76.1
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 3.3e-95 352.1 223 75.3
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 4.3e-95 351.7 219 77.6
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 4.3e-95 351.7 222 74.3
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 9.5e-95 350.5 219 76.7
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 2.8e-94 349.0 223 75.8
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.6e-94 348.6 219 77.2
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 3.6e-94 348.6 219 76.7
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 3.6e-94 348.6 221 74.2
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 4.7e-94 348.2 221 77.4
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 6.2e-94 347.8 223 75.3
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 6.2e-94 347.8 226 75.2
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 8.0e-94 347.4 218 76.6
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.0e-93 347.1 223 76.2
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.0e-93 347.1 221 76.5
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 4.0e-93 345.1 223 74.4
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 6.8e-93 344.4 223 75.3
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.0e-92 342.8 219 74.9
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 2.6e-92 342.4 223 73.5
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 4.4e-92 341.7 249 69.5
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.4e-90 336.7 223 75.8
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.4e-90 336.7 221 72.4
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 3.0e-88 328.9 304 57.2
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.9e-87 326.2 223 72.6
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 9.5e-87 323.9 220 72.3
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.6e-86 323.2 219 74.4
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 2.8e-86 322.4 223 68.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.3e-85 319.3 187 82.4
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 4.0e-85 318.5 223 70.4
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 4.0e-85 318.5 223 71.3
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 5.2e-85 318.2 221 71.9
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.2e-84 317.0 222 69.8
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 2.0e-84 316.2 315 55.2
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 4.9e-83 311.6 219 69.4
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 4.1e-82 308.5 192 78.1
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 2.1e-81 306.2 185 80.5
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.7e-81 305.8 221 65.2
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 6.0e-81 304.7 221 65.6
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 8.6e-80 300.8 223 63.2
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 5.6e-79 298.1 192 74.0
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.2e-78 297.0 187 76.5
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 3.5e-73 278.9 226 62.8
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 3.3e-71 272.3 193 71.0
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.2e-68 263.8 168 75.0
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 3.0e-64 249.2 154 79.2
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.6e-60 236.1 220 59.1
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 3.3e-55 219.2 156 65.4
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 4.0e-53 212.2 218 50.5
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 9.3e-42 174.5 119 66.4
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.0e-35 154.5 89 84.3
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 6.1e-33 145.2 190 37.9
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 5.3e-29 132.1 97 71.1
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 9.1e-21 104.8 211 31.3
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 4.4e-07 59.3 72 43.1


User provided reference genes

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