Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 0.0e+00 1583.5 845 100.0
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 7.6e-254 880.9 836 60.2
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 7.1e-252 874.4 848 57.4
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 5.6e-249 864.8 846 57.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.4e-247 859.4 826 57.1
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.1e-247 859.0 833 57.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 6.9e-247 857.8 839 57.7
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 9.0e-247 857.4 831 57.2
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.2e-246 857.1 839 57.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.6e-246 855.9 835 56.8
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 3.4e-246 855.5 846 57.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 4.5e-246 855.1 853 56.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.2e-245 852.8 836 57.1
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.2e-245 852.8 849 56.7
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.9e-245 852.4 849 56.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.4e-245 851.3 841 57.8
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.1e-244 850.5 826 56.3
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.6e-243 846.7 845 55.6
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.6e-243 846.7 848 55.7
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.6e-243 846.7 833 55.5
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 6.0e-243 844.7 843 57.2
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.3e-242 843.6 843 55.5
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.8e-242 843.2 837 55.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.3e-242 842.8 836 56.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.3e-242 842.8 828 55.9
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.1e-242 841.6 832 55.8
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 6.7e-242 841.3 849 56.5
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.5e-241 840.1 842 55.3
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.9e-241 839.7 853 56.6
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 2.1e-240 836.3 849 56.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.8e-240 835.1 846 55.6
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.2e-240 834.7 846 55.6
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 4.0e-239 832.0 843 55.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 9.0e-239 830.9 843 56.0
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.5e-238 830.1 839 56.3
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.6e-238 829.3 840 55.6
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 7.6e-238 827.8 830 54.8
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.3e-237 827.0 849 55.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.7e-237 826.6 842 54.9
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.7e-237 826.6 835 55.2
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 3.8e-237 825.5 834 55.5
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 5.5e-236 821.6 849 54.9
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 7.1e-236 821.2 828 56.3
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-235 820.5 853 55.6
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 2.1e-235 819.7 834 55.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.5e-235 818.9 856 55.3
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.3e-234 817.0 840 54.3
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.1e-234 815.1 832 54.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 8.7e-234 814.3 840 56.0
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.9e-233 813.1 847 54.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.4e-231 806.2 826 54.8
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 4.0e-231 805.4 849 54.1
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 5.3e-231 805.1 826 54.6
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 9.0e-231 804.3 822 54.5
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.2e-230 803.9 838 54.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.0e-230 803.1 829 54.2
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.6e-230 802.7 836 53.7
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.4e-230 802.4 808 56.2
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 4.9e-229 798.5 843 54.1
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 3.2e-228 795.8 830 53.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.2e-228 795.4 831 54.4
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.2e-227 793.9 843 53.4
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.1e-227 793.1 841 54.5
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.9e-226 788.9 834 53.8
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 5.1e-226 788.5 841 54.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.5e-225 786.2 863 53.4
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 4.3e-225 785.4 837 53.6
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-224 783.9 853 54.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-224 783.9 832 52.3
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.6e-224 783.5 838 52.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.0e-222 776.5 849 51.8
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 6.5e-221 771.5 861 52.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 8.5e-221 771.2 830 52.3
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.1e-220 770.8 858 52.1
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.1e-219 766.5 829 52.2
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 9.1e-215 751.1 797 53.1
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-214 750.7 847 50.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 9.7e-209 731.1 812 51.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 3.1e-207 726.1 844 49.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 4.1e-207 725.7 882 48.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 9.1e-207 724.5 838 49.6
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.5e-206 723.8 828 49.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.6e-206 723.0 816 50.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.2e-205 719.9 842 49.8
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.4e-204 717.2 945 47.3
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 9.4e-204 714.5 857 50.8
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.7e-203 713.0 815 50.2
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.7e-203 713.0 815 50.2
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.3e-202 709.9 840 50.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.3e-202 709.9 840 50.1
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.8e-200 703.0 843 50.9
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.0e-199 698.4 828 48.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 9.1e-199 698.0 848 48.6
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.5e-193 680.6 841 48.4
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 3.3e-193 679.5 859 49.4
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.3e-181 641.0 672 53.1
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-178 630.6 679 51.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.8e-178 630.6 846 46.7
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.4e-177 626.3 828 46.7
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.5e-164 584.3 629 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 6.0e-158 562.4 886 39.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-156 557.8 553 54.8
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 2.2e-152 543.9 601 51.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.6e-149 532.3 603 50.2
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 2.4e-143 513.8 843 40.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 7.8e-134 482.3 871 36.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 6.6e-133 479.2 867 39.6
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-121 441.8 455 54.3
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.6e-118 429.9 481 50.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.4e-116 422.5 391 59.3
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 6.1e-110 402.9 937 32.1
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.7e-105 386.0 425 51.8
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 8.5e-104 382.5 385 57.7
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.5e-95 354.4 304 58.6
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 7.9e-94 349.4 445 46.5
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 8.8e-85 319.3 449 42.8
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 4.2e-79 300.4 292 57.9
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-76 292.4 321 51.7
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.8e-75 287.0 332 50.6
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 5.2e-69 266.9 281 55.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 3.7e-67 260.8 200 64.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 3.3e-63 247.7 227 55.9
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 2.8e-62 244.6 239 56.9
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 8.0e-62 243.0 927 26.5
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.2e-60 239.2 236 56.8
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.0e-56 226.1 267 52.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.9e-56 224.2 196 62.8
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 8.1e-46 189.9 153 64.1
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 8.9e-45 186.4 213 48.4
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.2e-37 160.6 155 55.5
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.7e-35 154.5 185 49.7
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.4e-34 152.5 591 26.4
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.8e-33 146.7 145 52.4
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.4e-28 131.3 110 61.8
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.9e-27 127.5 212 41.5
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-26 125.9 175 42.9
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.0e-24 119.8 607 25.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.3e-24 118.6 102 55.9
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 3.9e-24 117.9 173 46.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 6.6e-24 117.1 276 37.0
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 5.6e-23 114.0 155 45.2
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.8e-22 111.7 278 35.6
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 6.2e-22 110.5 73 63.0
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-21 109.0 285 34.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-18 99.8 118 49.2
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 4.2e-18 97.8 856 20.9
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-14 86.3 76 56.6
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 4.5e-12 77.8 55 69.1
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.5e-12 77.8 95 46.3
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-11 76.3 52 65.4
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.5e-10 70.9 61 55.7
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 7.1e-10 70.5 198 34.8
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.2e-09 69.7 201 34.3
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 4.6e-09 67.8 68 47.1
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.8e-08 65.9 187 32.6
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 7.4e-07 60.5 163 26.4
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.7e-06 58.2 65 46.2


User provided reference genes

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