Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.6e-238 828.9 403 100.0
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.4e-159 565.5 387 73.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.1e-149 533.9 391 69.3
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 7.0e-149 531.2 386 70.5
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.5e-146 522.7 390 67.4
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.1e-145 519.6 383 67.6
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 8.0e-145 517.7 386 66.6
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 8.0e-145 517.7 386 66.3
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.8e-144 516.5 384 66.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 5.2e-144 515.0 403 64.5
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 8.9e-144 514.2 388 66.5
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.0e-143 513.1 380 66.8
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 2.6e-143 512.7 394 66.0
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.6e-143 512.7 366 68.0
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.4e-143 512.3 366 68.0
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 5.8e-143 511.5 386 66.1
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 5.8e-143 511.5 387 65.6
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 7.5e-143 511.1 389 65.3
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 7.5e-143 511.1 366 68.6
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.5e-143 511.1 366 67.8
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.3e-142 510.4 405 65.2
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.3e-142 510.4 364 69.8
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-142 510.0 367 67.8
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.9e-142 509.2 387 65.4
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 3.7e-142 508.8 385 65.7
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 8.3e-142 507.7 386 66.3
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 8.3e-142 507.7 386 66.3
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.1e-141 507.3 369 69.1
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 2.4e-141 506.1 394 66.0
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 4.1e-141 505.4 388 64.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 5.4e-141 505.0 379 66.2
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 5.4e-141 505.0 379 66.2
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.4e-141 505.0 395 65.8
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 9.2e-141 504.2 364 68.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.2e-140 503.8 365 67.9
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.6e-140 503.4 349 69.6
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.6e-140 503.4 386 65.8
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 2.0e-140 503.1 396 64.1
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.7e-140 502.7 351 69.5
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 4.6e-140 501.9 386 65.5
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 4.6e-140 501.9 392 65.3
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.7e-139 500.0 388 64.7
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.7e-139 500.0 400 64.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.0e-139 499.2 394 64.0
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.9e-139 498.8 367 67.3
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 5.0e-139 498.4 381 65.4
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 5.0e-139 498.4 346 69.7
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.6e-139 498.0 350 70.6
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 8.6e-139 497.7 367 68.9
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.2e-137 493.8 393 65.9
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.8e-137 492.7 389 64.0
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 2.8e-137 492.7 344 70.9
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.8e-136 490.0 393 64.6
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.1e-136 489.2 349 68.5
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.0e-136 488.8 388 63.1
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.0e-136 488.8 405 63.0
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 4.0e-136 488.8 385 64.2
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 6.8e-136 488.0 367 66.8
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 6.8e-136 488.0 407 62.7
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.2e-135 487.3 362 65.2
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 4.4e-135 485.3 383 64.2
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.5e-135 484.6 366 67.2
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.5e-135 484.6 342 69.0
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 9.8e-135 484.2 382 64.4
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.3e-134 483.8 375 65.1
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.9e-134 482.6 365 67.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 2.9e-134 482.6 381 63.5
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.9e-134 482.6 381 63.5
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.9e-134 482.6 366 64.5
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.7e-134 482.3 377 64.7
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 3.7e-134 482.3 371 64.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.3e-134 481.1 394 63.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-133 480.3 379 64.6
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.9e-133 479.9 384 63.3
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.4e-133 479.6 350 67.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.4e-133 478.4 381 63.5
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 5.4e-133 478.4 349 68.2
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 9.2e-133 477.6 337 69.1
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.2e-132 477.2 365 65.2
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.2e-132 477.2 389 63.2
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.6e-132 475.3 348 67.8
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 4.6e-132 475.3 382 62.8
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 7.8e-132 474.6 371 62.3
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.3e-131 473.8 387 62.5
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.0e-131 472.6 402 61.2
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.5e-130 469.5 366 63.9
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 3.3e-130 469.2 373 64.1
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 9.5e-130 467.6 392 62.2
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 9.5e-130 467.6 392 59.4
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.6e-129 466.8 376 61.7
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.1e-129 466.5 342 67.3
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.8e-128 463.4 401 60.1
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.8e-128 463.4 362 64.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.8e-128 463.4 364 61.8
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.3e-128 463.0 343 66.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.3e-128 463.0 382 62.3
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 3.1e-128 462.6 391 60.1
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 4.0e-128 462.2 349 65.9
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 8.9e-128 461.1 347 65.1
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 8.9e-128 461.1 389 61.2
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.5e-127 460.3 382 62.3
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.7e-126 456.8 382 63.4
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.2e-126 456.4 385 62.6
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 6.4e-126 454.9 325 66.8
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 8.4e-126 454.5 379 61.7
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.9e-125 453.4 404 59.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.4e-125 453.0 369 63.1
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.4e-125 453.0 312 68.9
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 4.1e-125 452.2 367 62.4
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.6e-124 450.3 367 62.4
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.7e-124 449.5 365 61.4
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.0e-124 448.4 348 64.7
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.0e-123 447.6 339 64.9
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 6.6e-123 444.9 364 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 9.6e-122 441.0 389 57.8
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.6e-121 440.3 369 59.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.8e-121 439.5 344 63.4
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 6.0e-116 421.8 345 60.6
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.9e-114 416.8 307 65.5
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.5e-114 416.4 347 60.8
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 4.5e-111 405.6 346 59.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 7.6e-111 404.8 363 57.9
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 6.4e-110 401.7 330 57.9
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.2e-108 397.5 357 57.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 6.0e-108 395.2 324 60.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 2.8e-105 386.3 366 54.1
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.6e-100 370.5 243 71.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-99 366.3 284 62.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.6e-97 360.5 402 49.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 6.9e-96 355.1 319 57.7
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.6e-95 351.7 307 58.0
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.0e-91 339.7 203 82.3
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-88 330.9 185 82.7
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 3.4e-87 326.2 187 79.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 6.3e-81 305.4 221 67.9
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-80 304.7 178 80.3
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.4e-79 299.7 295 54.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.2e-76 291.2 229 64.6
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 3.6e-76 289.7 400 40.8
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.5e-69 266.9 345 40.3
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.2e-68 264.6 305 44.6
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 5.2e-67 259.2 237 58.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 9.1e-64 248.4 212 57.5
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-59 234.6 231 53.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.8e-59 234.2 387 38.2
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.9e-53 214.2 223 50.7
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 5.2e-51 206.1 349 37.8
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.8e-44 183.7 126 72.2
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 7.5e-42 175.6 202 50.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.0e-32 142.5 149 52.3
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.4e-24 116.3 67 82.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 5.0e-22 109.8 113 48.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.5e-21 105.5 116 49.1
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 7.5e-18 95.9 57 78.9


User provided reference genes

Program Settings