Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.1e-125 453.4 243 100.0
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.1e-108 394.0 219 97.7
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.8e-105 385.2 234 85.9
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 3.8e-97 358.6 234 79.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 2.1e-95 352.8 234 78.2
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.7e-95 352.4 234 78.2
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.5e-95 352.1 234 78.2
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.8e-95 350.9 234 79.1
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.0e-94 350.5 234 79.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.0e-94 350.5 234 78.2
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.3e-94 350.1 234 78.6
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.3e-94 350.1 234 79.5
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.7e-94 349.7 234 77.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.3e-94 349.4 234 79.1
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.3e-94 349.4 234 78.6
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 3.9e-94 348.6 234 78.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.9e-94 348.6 234 78.6
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 3.9e-94 348.6 234 78.6
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 3.9e-94 348.6 234 78.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.9e-94 348.6 234 78.6
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 5.1e-94 348.2 234 78.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 5.1e-94 348.2 234 78.2
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.1e-94 348.2 234 77.8
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 5.1e-94 348.2 234 79.5
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.6e-94 347.8 234 77.8
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.6e-94 347.8 234 77.8
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 6.6e-94 347.8 234 77.4
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 8.7e-94 347.4 234 77.8
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-93 347.1 234 79.1
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.5e-93 346.7 234 78.2
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.9e-93 346.3 234 77.4
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.9e-93 346.3 234 77.4
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.9e-93 346.3 234 77.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.5e-93 345.9 234 77.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.5e-93 345.9 234 77.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.5e-93 345.9 234 77.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.5e-93 345.9 234 77.8
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 2.5e-93 345.9 240 78.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 3.3e-93 345.5 234 76.9
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.3e-93 345.5 233 77.3
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 4.3e-93 345.1 234 78.2
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.6e-93 344.7 234 76.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 5.6e-93 344.7 234 76.9
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 5.6e-93 344.7 234 77.4
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 7.3e-93 344.4 234 78.2
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 7.3e-93 344.4 234 76.5
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 9.6e-93 344.0 234 77.4
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-92 343.6 234 77.8
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.3e-92 343.6 234 77.8
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.6e-92 343.2 234 76.9
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 2.1e-92 342.8 234 77.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.8e-92 342.4 234 77.8
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 3.6e-92 342.0 234 77.4
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 3.6e-92 342.0 234 76.5
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.6e-92 342.0 234 76.5
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 3.6e-92 342.0 234 77.4
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.6e-92 342.0 234 77.8
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.8e-92 341.7 233 76.4
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 4.8e-92 341.7 234 76.1
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 6.2e-92 341.3 234 76.1
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 6.2e-92 341.3 234 77.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 6.2e-92 341.3 234 76.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.1e-92 340.9 234 76.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 8.1e-92 340.9 234 76.5
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.1e-91 340.5 234 76.9
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.4e-91 340.1 234 76.1
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.4e-91 340.1 234 76.1
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.4e-91 340.1 234 76.5
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.8e-91 339.7 234 75.2
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 1.8e-91 339.7 234 77.4
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.8e-91 339.7 234 76.5
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.4e-91 339.3 234 76.9
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 3.1e-91 339.0 234 76.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.1e-91 339.0 233 76.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 3.1e-91 339.0 234 76.5
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 3.1e-91 339.0 234 76.1
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.0e-91 338.6 234 76.9
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 4.0e-91 338.6 240 75.0
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 6.9e-91 337.8 234 75.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 9.0e-91 337.4 234 75.6
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 9.0e-91 337.4 235 76.2
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.2e-90 337.0 234 75.2
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.5e-90 336.7 234 76.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.0e-90 336.3 234 75.2
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.0e-90 336.3 234 75.2
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 7.6e-90 334.3 235 74.5
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 7.6e-90 334.3 234 74.4
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 9.9e-90 334.0 231 75.8
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.3e-89 333.6 234 74.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.3e-89 333.6 234 74.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.9e-89 332.4 234 74.8
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.9e-89 332.4 234 73.5
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 2.9e-89 332.4 221 79.2
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.9e-89 332.4 221 79.2
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.9e-89 332.4 225 78.2
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 3.8e-89 332.0 234 74.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.4e-89 331.3 234 73.1
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 8.4e-89 330.9 234 73.5
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 8.4e-89 330.9 232 76.7
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.1e-88 330.5 234 73.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.4e-88 330.1 225 77.8
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 1.9e-88 329.7 234 76.1
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.4e-88 329.3 231 74.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.2e-88 328.9 221 79.6
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.2e-88 328.6 234 73.9
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 7.1e-88 327.8 234 72.6
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.6e-87 326.6 235 72.8
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.1e-87 326.2 227 75.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.7e-87 325.9 234 73.5
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 6.0e-87 324.7 235 73.2
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 1.0e-86 323.9 235 72.8
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.3e-86 322.8 235 72.8
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 3.0e-86 322.4 235 72.3
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 3.0e-86 322.4 235 72.3
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 6.7e-86 321.2 234 73.1
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 6.7e-86 321.2 211 80.1
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.5e-85 320.1 234 72.2
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 4.3e-85 318.5 219 76.7
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 9.6e-85 317.4 227 75.3
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 9.6e-85 317.4 219 76.3
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 4.8e-84 315.1 219 76.3
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 4.8e-84 315.1 243 72.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.0e-83 312.0 227 71.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.2e-80 302.4 230 66.5
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.5e-80 301.6 230 67.0
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 9.3e-80 300.8 211 75.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.6e-79 300.1 220 68.6
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 7.9e-79 297.7 216 73.6
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 3.3e-77 292.4 219 68.9
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 4.3e-77 292.0 234 69.2
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.7e-76 288.9 236 66.5
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 5.3e-75 285.0 234 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.2e-74 283.9 236 62.3
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.9e-69 266.5 230 57.0
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.5e-66 256.9 234 62.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 6.5e-65 251.5 238 59.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 8.5e-65 251.1 209 62.2
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 6.7e-62 241.5 234 59.8
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-61 240.7 234 60.7
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.2e-58 230.7 209 57.9
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.2e-58 230.7 170 72.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.4e-58 229.2 239 59.4
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 8.5e-57 224.6 235 55.7
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.0e-53 213.4 220 56.4
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.3e-49 200.7 216 52.3
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.2e-47 194.1 217 50.7
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.3e-45 186.0 132 73.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-44 183.7 219 53.9
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.3e-41 174.1 122 73.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.7e-39 166.4 108 81.5
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.2e-34 151.0 179 52.0
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.4e-30 137.5 88 81.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.8e-27 127.1 129 58.1
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.0e-23 111.7 176 42.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.4e-21 106.3 69 79.7
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.9e-18 95.5 66 74.2


User provided reference genes

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