Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 5.6e-101 370.9 187 100.0
Nn3g18504 Nelumbo nucifera HOM05D006072 ORTHO05D007363 5.9e-42 174.9 202 49.0
MBI19_g02922_MAGBIO Magnolia biondii HOM05D006072 ORTHO05D007363 1.7e-41 173.3 137 60.6
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 5.6e-40 168.3 199 46.2
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 9.5e-40 167.5 162 55.6
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 6.1e-39 164.9 160 51.9
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 1.4e-38 163.7 199 46.7
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 4.0e-38 162.2 186 47.8
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 4.0e-38 162.2 195 47.7
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 5.2e-38 161.8 180 50.6
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 6.8e-38 161.4 196 47.4
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 1.5e-37 160.2 152 53.3
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 2.0e-37 159.8 136 57.4
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 2.6e-37 159.5 161 52.8
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 2.6e-37 159.5 166 52.4
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 3.4e-37 159.1 161 50.3
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 3.4e-37 159.1 173 49.1
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 3.4e-37 159.1 173 49.1
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 4.4e-37 158.7 150 56.0
AUR62003481 Chenopodium quinoa HOM05D006072 ORTHO05D007363 5.7e-37 158.3 191 43.5
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 5.7e-37 158.3 137 57.7
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 5.7e-37 158.3 192 45.8
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 7.5e-37 157.9 196 46.4
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 9.8e-37 157.5 184 45.7
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 1.3e-36 157.1 165 52.1
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 1.3e-36 157.1 200 45.5
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 1.3e-36 157.1 161 49.7
AUR62017790 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.7e-36 156.8 186 43.5
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 1.7e-36 156.8 136 58.8
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 2.2e-36 156.4 193 45.1
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 2.2e-36 156.4 193 45.1
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 2.2e-36 156.4 192 46.4
Dinv07032 Davidia involucrata HOM05D006072 ORTHO05D007363 2.9e-36 156.0 151 53.0
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 2.9e-36 156.0 184 46.7
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 3.7e-36 155.6 193 45.1
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 4.9e-36 155.2 175 46.3
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 4.9e-36 155.2 149 55.0
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 4.9e-36 155.2 182 50.0
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 6.4e-36 154.8 134 53.7
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 8.3e-36 154.5 162 51.9
Os02g0491300 Oryza sativa ssp. japonica HOM05D006072 ORTHO05D007363 8.3e-36 154.5 181 48.6
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 1.1e-35 154.1 151 50.3
AUR62015493 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.8e-35 153.3 188 47.9
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 1.8e-35 153.3 136 58.1
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 2.4e-35 152.9 136 52.2
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 3.2e-35 152.5 188 44.1
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 3.2e-35 152.5 152 50.7
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 4.1e-35 152.1 135 57.8
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 1.2e-34 150.6 136 53.7
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.2e-34 150.6 178 48.3
ATR0598G294 Amborella trichopoda HOM05D006072 ORTHO05D007363 2.0e-34 149.8 139 53.2
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 2.0e-34 149.8 136 55.1
PGR083G2817 Punica granatum HOM05D006072 ORTHO05D007363 3.5e-34 149.1 179 46.9
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 4.6e-34 148.7 167 49.7
Lalb_Chr12g0203671 Lupinus albus HOM05D006072 ORTHO05D007363 1.0e-33 147.5 201 42.3
Actinidia12426 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.3e-33 147.1 163 49.7
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.3e-33 147.1 186 44.6
Oeu025733.1 Olea europaea HOM05D006072 ORTHO05D007363 3.0e-33 146.0 153 49.7
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 5.0e-33 145.2 136 52.2
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 1.1e-32 144.1 164 49.4
Nitab4.5_0000876g0020 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.9e-32 143.3 137 51.1
Peaxi162Scf00003g00149 Petunia axillaris HOM05D006072 ORTHO05D007363 3.3e-32 142.5 168 46.4
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 9.5e-32 141.0 197 42.6
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.6e-31 140.2 183 42.6
Peaxi162Scf00003g00145 Petunia axillaris HOM05D006072 ORTHO05D007363 3.6e-31 139.0 142 49.3
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 6.2e-31 138.3 187 40.1
Rhsim09G0083000 Rhododendron simsii HOM05D006072 ORTHO05D007363 6.2e-31 138.3 154 50.0
Oeu007228.1 Olea europaea HOM05D006072 ORTHO05D007363 8.0e-31 137.9 137 51.8
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 4.0e-30 135.6 139 51.8
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 5.2e-30 135.2 136 49.3
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 6.8e-30 134.8 135 48.1
Sopen10g022790 Solanum pennellii HOM05D006072 ORTHO05D007363 1.2e-29 134.0 136 49.3
ATR0598G249 Amborella trichopoda HOM05D006072 ORTHO05D007363 2.0e-29 133.3 133 51.1
Cc02_g18000 Coffea canephora HOM05D006072 ORTHO05D007363 2.0e-29 133.3 196 43.9
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 2.0e-29 133.3 135 46.7
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 2.6e-29 132.9 172 41.9
SGA_v2.0_scaffold55G19813 Striga asiatica HOM05D006072 ORTHO05D007363 3.4e-29 132.5 136 48.5
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 4.4e-29 132.1 162 45.1
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 5.8e-29 131.7 135 47.4
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 2.2e-28 129.8 175 42.3
ATR0598G193 Amborella trichopoda HOM05D006072 ORTHO05D007363 4.9e-28 128.6 139 50.4
PGR083G1472 Punica granatum HOM05D006072 ORTHO05D007363 4.9e-28 128.6 135 48.1
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.4e-27 127.1 136 48.5
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 2.4e-27 126.3 136 47.1
SalBow3G0772 Salvia bowleyana HOM05D006072 ORTHO05D007363 2.4e-27 126.3 185 41.1
Migut.D00310 Erythranthe guttata HOM05D006072 ORTHO05D007363 7.0e-27 124.8 138 45.7
CSS0011017 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 9.2e-27 124.4 175 42.3
Sopen09g027060 Solanum pennellii HOM05D006072 ORTHO05D007363 2.7e-26 122.9 151 44.4
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 1.3e-25 120.6 137 44.5
PGSC0003DMG400019330 Solanum tuberosum HOM05D006072 ORTHO05D007363 1.3e-25 120.6 151 43.7
SalBow4G0595 Salvia bowleyana HOM05D006072 ORTHO05D007363 8.6e-25 117.9 139 44.6
CSS0004323 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 2.5e-24 116.3 122 50.0
SGA_v2.0_scaffold138G35329 Striga asiatica HOM05D000358 ORTHO05D007363 2.5e-24 116.3 143 42.7
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 5.6e-24 115.2 166 42.8
Peaxi162Scf00641g00039 Petunia axillaris HOM05D006072 ORTHO05D007363 1.2e-23 114.0 135 45.9
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 6.2e-23 111.7 167 39.5
Hma1.2p1_0281F.1_g113250 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 3.1e-22 109.4 120 48.3
arahy.Tifrunner.gnm1.ann1.78KFMW Arachis hypogaea HOM05D006072 ORTHO05D007363 7.5e-21 104.8 146 44.5
Dinv12556 Davidia involucrata HOM05D006072 ORTHO05D007363 1.4e-19 100.5 77 63.6
Ca_20317_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 1.6e-18 97.1 189 37.6
Dinv20308 Davidia involucrata HOM05D006072 ORTHO05D007363 5.1e-17 92.0 85 52.9
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 1.1e-16 90.9 74 59.5
Solyc09g065320.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 8.1e-15 84.7 81 51.9
arahy.Tifrunner.gnm1.ann1.G5ZNF6 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.4e-14 84.0 65 63.1
arahy.Tifrunner.gnm1.ann1.U641A1 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.4e-14 84.0 65 63.1
arahy.Tifrunner.gnm1.ann1.W4NXZ5 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.4e-14 84.0 65 63.1
unitig_0.g118 Utricularia gibba HOM05D006072 ORTHO05D007363 6.8e-14 81.6 100 40.0
Actinidia07224 Actinidia chinensis HOM05D006072 ORTHO05D007363 2.2e-12 76.6 70 54.3
Lsat_1_v5_gn_2_61421 Lactuca sativa HOM05D006072 ORTHO05D029972 3.7e-12 75.9 104 42.3
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 1.4e-11 73.9 129 33.3
Phvul.011G140200 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 2.4e-11 73.2 73 52.1
Dinv07189 Davidia involucrata HOM05D006072 ORTHO05D007363 4.1e-11 72.4 108 39.8
Lsat_1_v5_gn_1_2900 Lactuca sativa HOM05D006072 ORTHO05D007363 7.1e-11 71.6 139 34.5
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 1.3e-09 67.4 131 30.5
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 3.9e-09 65.9 132 30.3
Nn3g19189 Nelumbo nucifera HOM05D010623 ORTHO05D012718 3.9e-09 65.9 184 33.2
Migut.B01424 Erythranthe guttata HOM05D010623 ORTHO05D012718 6.6e-09 65.1 172 30.2
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 1.9e-08 63.5 174 32.8
vmacro13591 Vaccinium macrocarpon HOM05D010623 ORTHO05D012718 4.3e-08 62.4 184 29.3
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 9.6e-08 61.2 131 30.5
DCAR_025007 Daucus carota HOM05D010623 ORTHO05D012718 2.1e-07 60.1 196 27.0
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.1e-07 60.1 126 33.3
Ca_22792_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 4.7e-07 58.9 49 59.2
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 6.2e-07 58.5 133 30.8
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 6.2e-07 58.5 132 28.8
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 8.1e-07 58.2 128 30.5
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 8.1e-07 58.2 128 30.5
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 8.1e-07 58.2 128 30.5
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 1.4e-06 57.4 125 32.0
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 1.8e-06 57.0 130 32.3
Actinidia31739 Actinidia chinensis HOM05D010623 ORTHO05D012718 3.1e-06 56.2 114 31.6
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 3.1e-06 56.2 125 33.6
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 4.0e-06 55.8 173 28.3
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 5.2e-06 55.5 131 31.3
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 5.2e-06 55.5 166 30.7
CAN.G1918.1 Capsicum annuum HOM05D010623 ORTHO05D012718 6.8e-06 55.1 166 30.7
Lsat_1_v5_gn_4_172441 Lactuca sativa HOM05D006072 ORTHO05D007363 6.8e-06 55.1 92 39.1
Oeu060696.1 Olea europaea HOM05D010623 ORTHO05D012718 6.8e-06 55.1 132 31.1
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 8.9e-06 54.7 155 28.4
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 8.9e-06 54.7 129 27.9


User provided reference genes

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