Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 4.2e-53 211.1 106 100.0
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 9.8e-26 120.2 99 55.6
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.4e-24 116.3 102 52.9
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 1.2e-23 113.2 99 57.6
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 2.7e-23 112.1 99 57.6
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 1.3e-22 109.8 93 52.7
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.7e-22 109.4 93 52.7
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.7e-22 109.4 93 52.7
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.7e-22 109.4 93 52.7
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 3.0e-22 108.6 100 55.0
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 3.9e-22 108.2 106 50.9
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 3.9e-22 108.2 101 53.5
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 5.0e-22 107.8 100 52.0
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 5.0e-22 107.8 104 54.8
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 5.0e-22 107.8 106 51.9
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 6.6e-22 107.5 98 53.1
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 8.6e-22 107.1 98 52.0
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 8.6e-22 107.1 101 51.5
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 1.1e-21 106.7 98 53.1
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 1.5e-21 106.3 98 51.0
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 2.5e-21 105.5 99 54.5
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 2.5e-21 105.5 96 51.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 3.3e-21 105.1 98 51.0
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 4.3e-21 104.8 101 51.5
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 4.3e-21 104.8 100 53.0
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 5.6e-21 104.4 93 49.5
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 5.6e-21 104.4 99 53.5
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 7.3e-21 104.0 99 50.5
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 9.5e-21 103.6 99 52.5
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 1.2e-20 103.2 100 49.0
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 1.2e-20 103.2 92 51.1
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 1.2e-20 103.2 100 54.0
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.6e-20 102.8 99 53.5
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 2.1e-20 102.4 100 51.0
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 2.1e-20 102.4 100 51.0
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 2.8e-20 102.1 100 50.0
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 2.8e-20 102.1 100 52.0
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 4.7e-20 101.3 100 50.0
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 6.2e-20 100.9 93 48.4
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.1e-19 100.1 96 54.2
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 1.8e-19 99.4 99 49.5
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 3.1e-19 98.6 100 51.0
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 3.1e-19 98.6 99 49.5
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 1.2e-18 96.7 99 48.5
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 1.5e-18 96.3 99 52.5
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 1.5e-18 96.3 100 50.0
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 2.6e-18 95.5 110 47.3
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 2.6e-18 95.5 97 46.4
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 4.4e-18 94.7 104 48.1
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 4.4e-18 94.7 100 49.0
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 5.8e-18 94.4 95 48.4
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 7.5e-18 94.0 100 50.0
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 7.5e-18 94.0 98 51.0
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 1.3e-17 93.2 98 49.0
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 1.7e-17 92.8 97 46.4
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 2.2e-17 92.4 98 48.0
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 2.2e-17 92.4 98 48.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 2.2e-17 92.4 98 48.0
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 2.2e-17 92.4 98 48.0
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 2.2e-17 92.4 99 49.5
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 2.2e-17 92.4 102 48.0
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 2.9e-17 92.0 99 47.5
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 3.7e-17 91.7 98 48.0
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 3.7e-17 91.7 103 43.7
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 4.9e-17 91.3 96 49.0
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 4.9e-17 91.3 96 49.0
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.1e-16 90.1 99 46.5
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 1.1e-16 90.1 97 50.5
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.4e-16 89.7 98 46.9
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.4e-16 89.7 99 47.5
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.9e-16 89.4 100 49.0
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 3.2e-16 88.6 96 49.0
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 5.4e-16 87.8 98 44.9
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 5.4e-16 87.8 86 48.8
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 7.1e-16 87.4 93 43.0
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-15 86.3 98 48.0
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 2.7e-15 85.5 100 43.0
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 2.7e-15 85.5 98 43.9
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.7e-15 85.5 84 50.0
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.5e-15 85.1 99 45.5
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 1.7e-14 82.8 99 44.4
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 6.6e-14 80.9 101 39.6
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 6.6e-14 80.9 76 51.3
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.5e-13 79.7 101 43.6
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 9.5e-13 77.0 97 42.3
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 1.2e-12 76.6 100 43.0
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.6e-12 76.3 78 48.7
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 6.2e-12 74.3 98 38.8
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 1.1e-11 73.6 98 39.8
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.8e-11 72.8 98 38.8
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 5.8e-10 67.8 69 47.8
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 7.6e-10 67.4 97 36.1
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 6.4e-09 64.3 102 36.3
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 4.1e-08 61.6 50 58.0
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 7.1e-08 60.8 121 35.5
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 1.7e-06 56.2 65 41.5
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.7e-06 56.2 65 40.0
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.9e-06 55.1 63 41.3


User provided reference genes

Program Settings