Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 0.0e+00 1149.8 571 100.0
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 4.2e-288 994.2 571 88.8
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 1.5e-269 932.6 543 82.7
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 4.8e-268 927.5 544 82.5
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 3.8e-265 917.9 545 80.9
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 8.4e-265 916.8 544 80.9
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 4.2e-264 914.4 544 81.1
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 7.1e-264 913.7 559 79.4
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 9.3e-264 913.3 544 81.1
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 9.3e-264 913.3 540 82.0
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 2.1e-263 912.1 540 81.7
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 2.7e-263 911.8 539 81.1
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 3.5e-263 911.4 539 81.3
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 3.5e-263 911.4 544 80.9
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.0e-262 909.8 540 81.7
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.3e-262 909.4 540 81.7
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.3e-262 908.7 540 81.9
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 3.9e-262 907.9 544 79.6
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 3.9e-262 907.9 539 81.3
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 1.1e-261 906.4 544 79.6
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 1.1e-261 906.4 540 81.7
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 1.5e-261 906.0 545 80.2
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 1.9e-261 905.6 557 78.1
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 3.3e-261 904.8 544 79.4
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 4.3e-261 904.4 544 79.4
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 5.6e-261 904.0 544 79.2
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 5.6e-261 904.0 544 80.1
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 7.4e-261 903.7 544 79.6
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 7.4e-261 903.7 544 80.0
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.3e-260 902.9 544 78.9
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 2.1e-260 902.1 544 79.2
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 2.1e-260 902.1 544 80.0
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.8e-260 901.7 540 81.3
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 4.8e-260 901.0 541 80.6
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 8.2e-260 900.2 544 79.4
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 8.2e-260 900.2 544 79.6
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 1.1e-259 899.8 562 77.9
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 4.0e-259 897.9 544 78.9
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 5.3e-259 897.5 544 79.4
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 5.3e-259 897.5 544 79.0
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 5.3e-259 897.5 544 79.0
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 1.5e-258 896.0 544 78.9
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.5e-258 896.0 544 79.2
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 2.0e-258 895.6 542 80.1
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 2.6e-258 895.2 544 78.7
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 2.6e-258 895.2 544 78.9
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 5.8e-258 894.0 544 78.7
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 5.8e-258 894.0 544 79.0
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.0e-257 893.3 544 78.3
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 1.3e-257 892.9 542 80.1
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 1.7e-257 892.5 541 79.3
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 3.8e-257 891.3 543 78.1
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 1.1e-256 889.8 564 75.9
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 3.2e-256 888.3 543 78.5
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 3.2e-256 888.3 542 79.7
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 3.2e-256 888.3 540 78.7
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 7.1e-256 887.1 543 78.6
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 9.3e-256 886.7 579 75.1
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 9.3e-256 886.7 525 80.8
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 9.3e-256 886.7 543 79.0
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 6.1e-255 884.0 544 78.9
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 7.9e-255 883.6 582 74.4
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 1.8e-254 882.5 543 78.1
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 1.8e-254 882.5 543 78.1
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 2.3e-254 882.1 525 80.4
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 6.7e-254 880.6 544 78.3
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 1.1e-253 879.8 544 78.9
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 1.9e-253 879.0 542 79.0
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 1.9e-253 879.0 522 80.8
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 3.3e-253 878.2 570 75.6
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 4.3e-253 877.9 520 80.4
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 5.7e-253 877.5 545 76.7
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 9.7e-253 876.7 522 81.0
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 1.6e-252 875.9 525 79.8
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 2.2e-252 875.5 522 80.1
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 2.8e-252 875.2 540 78.5
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 8.2e-252 873.6 525 79.4
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 2.4e-251 872.1 544 78.5
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 3.1e-251 871.7 540 78.3
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.5e-250 869.4 508 82.7
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 2.0e-250 869.0 551 77.1
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 2.6e-250 868.6 540 77.4
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.2e-249 865.5 565 74.2
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 1.9e-248 862.4 539 76.6
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 7.2e-248 860.5 518 80.3
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 1.0e-246 856.7 535 76.1
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.0e-246 856.7 647 67.7
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 5.1e-246 854.4 518 79.0
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 9.7e-245 850.1 517 79.5
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 2.2e-244 849.0 540 74.6
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 1.2e-242 843.2 544 75.2
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 7.2e-240 833.9 542 74.7
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 4.7e-239 831.2 541 74.5
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 7.9e-239 830.5 569 71.7
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.0e-238 830.1 538 74.5
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 1.4e-238 829.7 541 75.8
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 5.0e-233 811.2 539 74.0
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 5.0e-233 811.2 468 83.8
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 5.7e-229 797.7 516 76.2
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 3.7e-228 795.0 540 71.3
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 1.4e-227 793.1 467 81.6
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 4.1e-227 791.6 462 82.7
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.0e-225 786.9 468 80.1
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 9.4e-224 780.4 457 82.7
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 4.0e-222 775.0 465 80.9
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 8.0e-215 750.7 439 82.5
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 1.6e-210 736.5 538 66.9
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 3.8e-209 731.9 443 80.1
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 2.3e-198 696.0 544 62.1
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 4.6e-186 655.2 460 69.8
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 2.2e-172 609.8 527 58.1
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 4.9e-172 608.6 552 56.2
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 1.1e-163 580.9 400 72.0
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 2.1e-154 550.1 458 59.2
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 3.3e-152 542.7 518 54.1
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 1.8e-137 493.8 332 73.2
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.3e-124 451.1 272 81.6
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 5.9e-85 319.3 254 60.6
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 7.0e-78 295.8 158 88.6
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 4.3e-51 206.8 486 28.2
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 2.4e-33 147.9 155 51.6
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 3.8e-31 140.6 465 26.5
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 2.5e-30 137.9 90 71.1
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.5e-24 118.6 78 74.4
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 1.3e-18 99.0 66 65.2
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 6.3e-18 96.7 75 62.7
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.8e-09 68.6 377 24.1
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 2.9e-07 61.2 30 93.3


User provided reference genes

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