Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004053 Vanilla planifolia HOM05D001815 ORTHO05D001830 5.7e-55 217.2 103 100.0
HPP92_004049 Vanilla planifolia HOM05D001815 ORTHO05D001830 4.6e-28 127.9 61 95.1
Eucgr.F01406 Eucalyptus grandis HOM05D001815 ORTHO05D001830 2.1e-17 92.4 54 75.9
Manes.03G091032 Manihot esculenta HOM05D001815 ORTHO05D001830 2.1e-17 92.4 56 69.6
Nn4g26577 Nelumbo nucifera HOM05D001815 ORTHO05D001830 2.1e-17 92.4 58 65.5
EL10Ac4g08493 Beta vulgaris HOM05D001815 ORTHO05D001830 2.8e-17 92.0 62 64.5
TAR627G0127 Trochodendron aralioides HOM05D001815 ORTHO05D001830 4.8e-17 91.3 54 72.2
Cc05_g10400 Coffea canephora HOM05D001815 ORTHO05D001830 1.1e-16 90.1 54 74.1
PSO541G1351 Papaver somniferum HOM05D001815 ORTHO05D001830 1.1e-16 90.1 67 58.2
Aqoxy2G03849 Aquilegia oxysepala HOM05D001815 ORTHO05D001830 2.4e-16 89.0 62 61.3
MSTRG.12847 Avicennia marina HOM05D001815 ORTHO05D001830 2.4e-16 89.0 54 68.5
Thecc.07G145400 Theobroma cacao HOM05D001815 ORTHO05D001830 3.1e-16 88.6 54 68.5
unitig_37.g12023 Utricularia gibba HOM05D001815 ORTHO05D001830 5.3e-16 87.8 56 67.9
MELO3C016153.2 Cucumis melo HOM05D001815 ORTHO05D001830 6.9e-16 87.4 52 75.0
Gohir.D01G030200 Gossypium hirsutum HOM05D001815 ORTHO05D001830 6.9e-16 87.4 54 66.7
Gorai.002G039700 Gossypium raimondii HOM05D001815 ORTHO05D001830 6.9e-16 87.4 54 66.7
MD10G1193800 Malus domestica HOM05D001815 ORTHO05D001830 6.9e-16 87.4 62 58.1
CSS0003616 Camellia sinensis var. sinensis HOM05D001815 ORTHO05D001830 9.0e-16 87.0 52 71.2
COL.COLO4_17427 Corchorus olitorius HOM05D001815 ORTHO05D001830 9.0e-16 87.0 54 66.7
CANSAT56G0607 Cannabis sativa HOM05D001815 ORTHO05D001830 1.2e-15 86.7 62 59.7
Dinv26678 Davidia involucrata HOM05D001815 ORTHO05D001830 1.2e-15 86.7 54 66.7
Zm00001eb120200 Zea mays HOM05D001815 ORTHO05D001830 1.2e-15 86.7 53 67.9
Ciclev10022064m.g Citrus clementina HOM05D001815 ORTHO05D001830 1.5e-15 86.3 62 58.1
CsaV3_4G007800 Cucumis sativus L. HOM05D001815 ORTHO05D001830 1.5e-15 86.3 52 75.0
Lj1g0014939 Lotus japonicus HOM05D001815 ORTHO05D001830 1.5e-15 86.3 53 67.9
Sabra16G0249700 Salix brachista HOM05D001815 ORTHO05D001830 1.5e-15 86.3 54 66.7
Duzib213G0047 Durio zibethinus HOM05D001815 ORTHO05D001830 2.6e-15 85.5 54 68.5
Glyma.15G248300 Glycine max HOM05D001815 ORTHO05D001830 2.6e-15 85.5 55 70.9
Hma1.2p1_0325F.1_g125910 Hydrangea macrophylla HOM05D001815 ORTHO05D001830 2.6e-15 85.5 54 66.7
Os01g0210500 Oryza sativa ssp. japonica HOM05D001815 ORTHO05D001830 2.6e-15 85.5 53 67.9
Prupe.4G150500 Prunus persica HOM05D001815 ORTHO05D001830 2.6e-15 85.5 62 56.5
QL04p070114 Quercus lobata HOM05D001815 ORTHO05D001830 2.6e-15 85.5 52 71.2
Gohir.A01G042200 Gossypium hirsutum HOM05D001815 ORTHO05D001830 3.4e-15 85.1 54 64.8
TAR629G0524 Trochodendron aralioides HOM05D001815 ORTHO05D001830 4.4e-15 84.7 54 68.5
vmacro09428 Vaccinium macrocarpon HOM05D001815 ORTHO05D001830 4.4e-15 84.7 52 69.2
ClCG07G010470 Citrullus lanatus HOM05D001815 ORTHO05D001830 5.8e-15 84.3 52 71.2
PGR083G2498 Punica granatum HOM05D001815 ORTHO05D001830 5.8e-15 84.3 54 64.8
RhsimUnG0205000 Rhododendron simsii HOM05D001815 ORTHO05D001830 5.8e-15 84.3 52 69.2
Sc03g0011030 Simmondsia chinensis HOM05D001815 ORTHO05D001830 5.8e-15 84.3 52 67.3
SGA_v2.0_scaffold73G24344 Striga asiatica HOM05D001815 ORTHO05D001830 7.6e-15 84.0 56 62.5
MBI07_g26351_MAGBIO Magnolia biondii HOM05D001815 ORTHO05D001830 9.9e-15 83.6 54 68.5
Glyma.02G019600 Glycine max HOM05D001815 ORTHO05D001830 1.7e-14 82.8 61 59.0
MSTRG.15016 Avicennia marina HOM05D001815 ORTHO05D001830 2.2e-14 82.4 54 66.7
CDE02G4739 Ceratophyllum demersum HOM05D001815 ORTHO05D001830 2.2e-14 82.4 57 61.4
CDE06G0414 Ceratophyllum demersum HOM05D001815 ORTHO05D001830 2.2e-14 82.4 57 61.4
AUR62037967 Chenopodium quinoa HOM05D001815 ORTHO05D001830 2.9e-14 82.0 52 65.4
AUR62043085 Chenopodium quinoa HOM05D001815 ORTHO05D001830 2.9e-14 82.0 52 65.4
Lalb_Chr19g0133631 Lupinus albus HOM05D001815 ORTHO05D001830 2.9e-14 82.0 61 59.0
TPR.G16479 Trifolium pratense HOM05D000544 ORTHO05D001830 2.9e-14 82.0 54 63.0
VMungo1080G0138 Vigna mungo HOM05D001815 ORTHO05D001830 2.9e-14 82.0 52 69.2
arahy.Tifrunner.gnm1.ann1.SEKD5X Arachis hypogaea HOM05D001815 ORTHO05D001830 3.8e-14 81.6 50 70.0
Cpa.g.sc77.85 Carica papaya HOM05D001815 ORTHO05D001830 3.8e-14 81.6 52 67.3
Cfa019461 Carpinus fangiana HOM05D001815 ORTHO05D001830 3.8e-14 81.6 57 61.4
DCAR_013788 Daucus carota HOM05D001815 ORTHO05D001830 3.8e-14 81.6 54 66.7
Potri.001G379000 Populus trichocarpa HOM05D001815 ORTHO05D001830 3.8e-14 81.6 71 53.5
Hund02315 Selenicereus undatus HOM05D001815 ORTHO05D001830 3.8e-14 81.6 51 64.7
Solyc07g061790.3 Solanum lycopersicum HOM05D001815 ORTHO05D001830 3.8e-14 81.6 56 62.5
Sopen07g030110 Solanum pennellii HOM05D001815 ORTHO05D001830 3.8e-14 81.6 56 62.5
PGSC0003DMG400027630 Solanum tuberosum HOM05D001815 ORTHO05D001830 4.9e-14 81.3 52 67.3
TWI39G0426 Tripterygium wilfordii HOM05D001815 ORTHO05D001830 4.9e-14 81.3 53 66.0
ATR0733G060 Amborella trichopoda HOM05D001815 ORTHO05D001830 8.4e-14 80.5 53 62.3
arahy.Tifrunner.gnm1.ann1.QR9HB8 Arachis hypogaea HOM05D001815 ORTHO05D001830 1.1e-13 80.1 50 68.0
Glyma.01G044000 Glycine max HOM05D001815 ORTHO05D001830 1.1e-13 80.1 57 61.4
RcHm_v2.0_Chr5g0028041 Rosa chinensis HOM05D001815 ORTHO05D001830 1.1e-13 80.1 62 53.2
Sed0022679 Sechium edule HOM05D001815 ORTHO05D001830 1.1e-13 80.1 52 67.3
THA.LOC104813983 Tarenaya hassleriana HOM05D001815 ORTHO05D001830 1.1e-13 80.1 62 56.5
Ah.06g187460 Amaranthus hybridus HOM05D001815 ORTHO05D001830 1.4e-13 79.7 55 60.0
Ca_23980_v3 Cicer arietinum L. HOM05D001815 ORTHO05D001830 1.4e-13 79.7 51 64.7
VMungo1127G0210 Vigna mungo HOM05D001815 ORTHO05D001830 1.9e-13 79.3 52 63.5
FvH4_3g16830 Fragaria vesca HOM05D001815 ORTHO05D001830 2.4e-13 79.0 62 53.2
FAN11G0591 Fragaria x ananassa HOM05D001815 ORTHO05D001830 2.4e-13 79.0 62 53.2
FAN16G1693 Fragaria x ananassa HOM05D001815 ORTHO05D001830 2.4e-13 79.0 62 53.2
FAN21G2157 Fragaria x ananassa HOM05D001815 ORTHO05D001830 2.4e-13 79.0 62 53.2
FAN21G2691 Fragaria x ananassa HOM05D001815 ORTHO05D001830 2.4e-13 79.0 62 53.2
SEGI_24065 Sequoiadendron giganteum HOM05D001815 ORTHO05D001830 2.4e-13 79.0 52 59.6
HanXRQChr10g0305701 Helianthus annuus HOM05D001815 ORTHO05D001830 3.2e-13 78.6 52 61.5
Psat4g136760 Pisum sativum HOM05D001815 ORTHO05D001830 3.2e-13 78.6 57 57.9
Phvul.011G173900 Phaseolus vulgaris HOM05D001815 ORTHO05D001830 5.4e-13 77.8 51 60.8
Solyc07g061800.4 Solanum lycopersicum HOM05D001815 ORTHO05D001830 9.3e-13 77.0 50 66.0
Sopen07g030120 Solanum pennellii HOM05D001815 ORTHO05D001830 9.3e-13 77.0 50 66.0
TWI39G0478 Tripterygium wilfordii HOM05D001815 ORTHO05D001830 9.3e-13 77.0 75 52.0
Thhalv10008655m.g Eutrema salsugineum HOM05D001815 ORTHO05D001830 1.6e-12 76.3 52 59.6
Nitab4.5_0001140g0220 Nicotiana tabacum HOM05D001815 ORTHO05D001830 1.6e-12 76.3 52 61.5
Peaxi162Scf00111g00924 Petunia axillaris HOM05D001815 ORTHO05D020311 2.1e-12 75.9 52 57.7
Sp1g15220 Schrenkiella parvula HOM05D001815 ORTHO05D001830 2.1e-12 75.9 64 53.1
Carub.0001s1683 Capsella rubella HOM05D001815 ORTHO05D001830 2.7e-12 75.5 52 55.8
Ciclev10024466m.g Citrus clementina HOM05D001815 ORTHO05D001830 2.7e-12 75.5 55 56.4
ECA234G3837 Erigeron canadensis HOM05D001815 ORTHO05D001830 2.7e-12 75.5 51 60.8
Lsat_1_v5_gn_5_125561 Lactuca sativa HOM05D001815 ORTHO05D001830 2.7e-12 75.5 52 59.6
Aa31LG7G1920 Aethionema arabicum HOM05D001815 ORTHO05D001830 3.5e-12 75.1 64 48.4
BcaC08g47418 Brassica carinata HOM05D001815 ORTHO05D001830 4.6e-12 74.7 52 55.8
CAN.G375.90 Capsicum annuum HOM05D001815 ORTHO05D001830 4.6e-12 74.7 50 64.0
AL1G29300 Arabidopsis lyrata HOM05D001815 ORTHO05D001830 6.0e-12 74.3 52 55.8
AT1G17100 Arabidopsis thaliana HOM05D001815 ORTHO05D001830 6.0e-12 74.3 52 55.8
BcaB02g06685 Brassica carinata HOM05D001815 ORTHO05D001830 6.0e-12 74.3 52 57.7
A06p13000 Brassica napus HOM05D001815 ORTHO05D001830 6.0e-12 74.3 52 57.7
C05p15460 Brassica napus HOM05D001815 ORTHO05D001830 6.0e-12 74.3 52 57.7
BolC5t30255H Brassica oleracea HOM05D001815 ORTHO05D001830 6.0e-12 74.3 52 57.7
BraA06t24458Z Brassica rapa HOM05D001815 ORTHO05D001830 6.0e-12 74.3 52 57.7
CARHR017630 Cardamine hirsuta HOM05D001815 ORTHO05D001830 6.0e-12 74.3 53 56.6
Medtr8g461390 Medicago truncatula HOM05D001815 ORTHO05D001830 6.0e-12 74.3 49 63.3
Migut.M00599 Erythranthe guttata HOM05D001815 ORTHO05D001830 7.8e-12 73.9 54 59.3
Nitab4.5_0006614g0010 Nicotiana tabacum HOM05D001815 ORTHO05D001830 1.0e-11 73.6 52 59.6
A07p43740 Brassica napus HOM05D001815 ORTHO05D001830 1.3e-11 73.2 76 44.7
BraA07t31883Z Brassica rapa HOM05D001815 ORTHO05D001830 1.3e-11 73.2 76 44.7
Lj1A818T17 Lonicera japonica HOM05D001815 ORTHO05D001830 1.3e-11 73.2 60 56.7
C06p52380 Brassica napus HOM05D001815 ORTHO05D001830 1.7e-11 72.8 52 53.8
Lalb_Chr19g0133621 Lupinus albus HOM05D001815 ORTHO05D001830 2.3e-11 72.4 59 54.2
BolC6t40258H Brassica oleracea HOM05D001815 ORTHO05D001830 3.9e-11 71.6 50 54.0
Sp5g33550 Schrenkiella parvula HOM05D001815 ORTHO05D001830 8.7e-11 70.5 50 52.0
AT1G78450 Arabidopsis thaliana HOM05D001815 ORTHO05D001830 1.5e-10 69.7 58 48.3
BcaB03g16019 Brassica carinata HOM05D001815 ORTHO05D001830 1.5e-10 69.7 52 50.0
BcaB03g16022 Brassica carinata HOM05D001815 ORTHO05D001830 3.3e-10 68.6 52 50.0
CAN.G375.88 Capsicum annuum HOM05D001815 ORTHO05D001830 5.6e-10 67.8 52 53.8
SalBow8G3045 Salvia bowleyana HOM05D001815 ORTHO05D001830 5.6e-10 67.8 52 53.8
Haze_08486 Corylus avellana HOM05D001815 ORTHO05D001830 9.6e-10 67.0 51 52.9
Glyma.06G226900 Glycine max HOM05D001815 ORTHO05D001830 3.6e-09 65.1 52 51.9
Peaxi162Scf00037g00519 Petunia axillaris HOM05D001815 ORTHO05D001830 3.6e-09 65.1 52 48.1
Glyma.06G227000 Glycine max HOM05D001815 ORTHO05D001830 4.8e-09 64.7 52 53.8
SEGI_08618 Sequoiadendron giganteum HOM05D001815 ORTHO05D001830 6.2e-09 64.3 51 52.9
SEGI_13515 Sequoiadendron giganteum HOM05D001815 ORTHO05D001830 1.8e-08 62.8 51 52.9
MBI07_g41900_MAGBIO Magnolia biondii HOM05D001815 ORTHO05D001830 5.3e-08 61.2 50 50.0
CAN.G375.89 Capsicum annuum HOM05D001815 ORTHO05D001830 9.0e-08 60.5 50 50.0
CBR_g48160 Chara braunii HOM05D001815 ORTHO05D001830 2.6e-07 58.9 47 51.1
BcaB01g04119 Brassica carinata HOM05D001815 ORTHO05D001830 3.4e-07 58.5 60 43.3
CARHR071970 Cardamine hirsuta HOM05D001815 ORTHO05D001830 4.5e-07 58.2 57 42.1
Thhalv10019113m.g Eutrema salsugineum HOM05D001815 ORTHO05D001830 4.5e-07 58.2 61 42.6
AT1G78460 Arabidopsis thaliana HOM05D001815 ORTHO05D001830 5.8e-07 57.8 50 44.0
CARHR122790 Cardamine hirsuta HOM05D001815 ORTHO05D001830 7.6e-07 57.4 60 46.7
vmacro16075 Vaccinium macrocarpon HOM05D001815 ORTHO05D001830 9.9e-07 57.0 50 42.0
AL2G38830 Arabidopsis lyrata HOM05D001815 ORTHO05D001830 1.3e-06 56.6 60 41.7
BcaB03g16020 Brassica carinata HOM05D001815 ORTHO05D001830 2.2e-06 55.8 61 39.3
BcaB03g16023 Brassica carinata HOM05D001815 ORTHO05D001830 2.2e-06 55.8 61 39.3
VMungo1215G1607 Vigna mungo HOM05D001815 ORTHO05D001830 2.2e-06 55.8 50 44.0
Sp5g33560 Schrenkiella parvula HOM05D001815 ORTHO05D001830 3.8e-06 55.1 50 46.0
A07p43750 Brassica napus HOM05D001815 ORTHO05D001830 4.9e-06 54.7 61 39.3
BraA07t31884Z Brassica rapa HOM05D001815 ORTHO05D001830 4.9e-06 54.7 61 39.3
Aa31LG4G2510 Aethionema arabicum HOM05D001815 ORTHO05D001830 6.4e-06 54.3 49 44.9
DCAR_013789 Daucus carota HOM05D001815 ORTHO05D001830 6.4e-06 54.3 54 42.6
Phvul.003G030800 Phaseolus vulgaris HOM05D001815 ORTHO05D001830 8.4e-06 53.9 51 45.1


User provided reference genes

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