Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 0.0e+00 1248.0 622 100.0
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 7.3e-230 800.8 578 68.9
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 3.8e-226 788.5 616 65.7
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 6.0e-224 781.2 608 65.8
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 7.4e-222 774.2 620 64.2
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 4.8e-221 771.5 620 64.2
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 6.9e-220 767.7 605 63.6
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 2.0e-219 766.1 620 64.0
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 9.9e-219 763.8 619 62.7
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 2.9e-218 762.3 613 62.3
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.9e-218 762.3 613 62.5
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 6.4e-218 761.1 621 61.0
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 8.4e-218 760.8 622 62.2
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.9e-217 759.6 620 61.5
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 4.2e-217 758.4 620 61.1
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 7.1e-217 757.7 620 60.8
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 2.1e-216 756.1 615 62.9
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 6.0e-216 754.6 620 60.3
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 6.0e-216 754.6 620 60.3
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 7.9e-216 754.2 616 62.2
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.0e-215 753.8 621 61.5
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 1.0e-215 753.8 620 60.8
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 1.0e-215 753.8 620 60.8
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 1.0e-215 753.8 595 62.9
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 2.3e-215 752.7 620 63.2
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 3.9e-215 751.9 620 60.8
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 3.9e-215 751.9 620 60.3
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.7e-215 751.1 620 63.1
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 6.7e-215 751.1 616 60.2
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 8.7e-215 750.7 620 60.8
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.1e-214 750.4 618 62.1
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.1e-214 750.4 614 62.1
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 1.5e-214 750.0 617 60.8
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.5e-214 750.0 611 60.7
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 2.5e-214 749.2 615 61.3
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 2.5e-214 749.2 619 61.4
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 3.3e-214 748.8 614 61.6
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 4.3e-214 748.4 619 60.7
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 9.6e-214 747.3 616 60.7
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 9.6e-214 747.3 620 61.3
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 1.3e-213 746.9 615 62.3
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 1.3e-213 746.9 594 63.6
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 1.6e-213 746.5 619 61.1
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 1.6e-213 746.5 606 61.6
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 2.1e-213 746.1 620 60.2
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 2.1e-213 746.1 622 62.2
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.8e-213 745.7 620 63.5
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 2.8e-213 745.7 619 61.2
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 4.8e-213 745.0 614 60.9
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 4.8e-213 745.0 621 61.2
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 6.2e-213 744.6 593 63.9
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.8e-212 743.0 598 61.4
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 1.8e-212 743.0 595 64.9
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.4e-212 742.7 610 61.1
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.4e-212 742.7 619 62.5
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 2.4e-212 742.7 620 61.0
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 4.0e-212 741.9 617 61.1
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 5.3e-212 741.5 619 62.2
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 5.3e-212 741.5 595 64.7
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 2.6e-211 739.2 612 60.9
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 2.6e-211 739.2 621 61.5
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 2.6e-211 739.2 616 61.4
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 3.4e-211 738.8 629 60.9
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 4.5e-211 738.4 616 61.0
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 5.8e-211 738.0 589 62.1
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 7.6e-211 737.6 617 60.5
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 7.6e-211 737.6 600 60.7
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 2.2e-210 736.1 617 61.3
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 4.9e-210 734.9 621 61.7
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 6.5e-210 734.6 620 61.3
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.5e-210 734.6 628 61.8
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 8.4e-210 734.2 616 60.7
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 1.1e-209 733.8 624 60.3
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 1.1e-209 733.8 616 60.4
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.1e-209 733.8 594 62.3
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 1.4e-209 733.4 621 60.9
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 1.4e-209 733.4 628 60.2
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 1.9e-209 733.0 613 62.3
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.9e-209 733.0 616 60.7
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 1.9e-209 733.0 591 62.8
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 3.2e-209 732.3 622 60.6
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 4.2e-209 731.9 622 60.0
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 5.5e-209 731.5 650 58.3
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 5.5e-209 731.5 578 64.4
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 1.8e-207 726.5 623 60.5
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 3.0e-207 725.7 578 63.3
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 5.1e-207 724.9 576 63.2
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 3.3e-206 722.2 616 59.4
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 1.3e-205 720.3 560 64.8
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 6.3e-205 718.0 560 64.1
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.9e-203 711.4 621 59.7
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 7.6e-203 711.1 671 55.7
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 2.5e-198 696.0 603 60.5
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 7.7e-195 684.5 603 59.4
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.7e-194 683.3 625 59.5
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 2.2e-194 682.9 621 57.8
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 3.9e-191 672.2 580 60.7
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.5e-187 660.2 616 56.7
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 4.2e-185 652.1 451 69.0
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 3.3e-182 642.5 451 67.8
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 2.6e-179 632.9 559 59.4
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 3.6e-176 622.5 437 68.2
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 2.8e-173 612.8 434 69.1
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.2e-169 599.4 409 69.9
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 2.7e-168 596.3 619 53.2
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 1.5e-166 590.5 420 67.9
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 1.8e-164 583.6 616 51.9
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.1e-148 531.2 483 59.8
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.4e-143 514.2 634 46.5
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 1.8e-143 513.8 473 59.0
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 4.3e-137 492.7 601 47.4
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 1.1e-135 488.0 479 57.2
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 4.9e-133 479.2 597 45.7
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 8.4e-125 451.8 482 53.7
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 6.6e-114 415.6 399 58.4
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 4.0e-111 406.4 621 39.1
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 4.9e-101 372.9 363 56.2
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-84 317.0 222 66.2
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 4.3e-81 306.6 214 72.4
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 1.1e-76 292.0 390 44.6
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.3e-74 284.3 223 58.7
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 2.0e-73 281.2 615 34.3
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 7.0e-71 272.7 297 53.5
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 4.4e-57 226.9 591 31.5
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.1e-55 222.2 565 30.6
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 2.3e-50 204.5 536 31.9
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 5.9e-46 189.9 146 66.4
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.9e-44 184.9 146 64.4
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 6.8e-42 176.4 137 65.7
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.0e-41 174.9 126 63.5
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 3.1e-39 167.5 95 74.7
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 6.6e-37 159.8 145 60.7
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 4.7e-19 100.5 73 60.3
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.8e-18 98.6 93 57.0
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.8e-18 98.6 156 44.2
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.3e-16 92.4 68 63.2
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 3.7e-16 90.9 51 74.5
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 4.9e-08 63.9 43 67.4


User provided reference genes

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