Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 2.7e-266 921.4 455 100.0
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 8.6e-111 404.8 455 47.3
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.1e-97 361.3 441 42.2
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 3.5e-96 356.3 453 41.7
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 2.3e-95 353.6 450 42.9
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 3.9e-95 352.8 452 42.0
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 4.7e-93 345.9 455 41.1
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 1.5e-91 340.9 417 44.8
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 9.9e-91 338.2 455 40.4
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 4.9e-90 335.9 450 41.8
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 2.4e-89 333.6 455 39.6
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.2e-88 331.3 453 41.1
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 4.6e-88 329.3 443 40.6
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 4.6e-88 329.3 443 40.6
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 6.0e-88 328.9 464 39.9
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 1.0e-87 328.2 457 39.8
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 3.9e-87 326.2 450 40.4
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 6.6e-87 325.5 456 40.6
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 5.6e-86 322.4 452 38.7
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 1.2e-85 321.2 463 40.2
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 2.8e-85 320.1 442 40.5
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 6.2e-85 318.9 460 39.1
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 8.1e-85 318.5 458 39.5
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 1.1e-84 318.2 453 38.0
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 3.1e-84 316.6 454 39.2
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 3.1e-84 316.6 452 38.7
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 8.9e-84 315.1 452 38.7
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 2.0e-83 313.9 455 38.5
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 2.6e-83 313.5 446 38.6
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 2.6e-83 313.5 446 38.6
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 5.8e-83 312.4 458 39.1
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 7.6e-83 312.0 459 39.7
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 3.8e-82 309.7 459 40.1
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 4.9e-82 309.3 440 39.8
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 8.4e-82 308.5 463 37.8
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.4e-81 307.8 446 39.5
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 2.4e-81 307.0 451 37.9
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 3.2e-81 306.6 464 38.8
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 9.2e-81 305.1 456 37.5
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 1.0e-79 301.6 424 41.0
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 1.3e-79 301.2 487 37.6
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.7e-79 300.8 457 36.8
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 2.3e-79 300.4 457 37.6
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 5.1e-79 299.3 451 39.9
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 3.3e-78 296.6 324 47.8
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 4.3e-78 296.2 318 48.4
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 4.7e-77 292.7 456 37.1
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 4.7e-77 292.7 446 37.0
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 6.2e-77 292.4 448 37.3
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 6.2e-77 292.4 447 38.5
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 8.1e-77 292.0 457 36.1
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 1.4e-76 291.2 458 36.0
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 2.4e-76 290.4 448 37.3
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 2.6e-75 287.0 447 37.6
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 8.4e-74 282.0 456 35.7
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 1.1e-73 281.6 454 35.9
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 1.1e-73 281.6 449 36.5
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 1.6e-72 277.7 455 36.3
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 4.6e-72 276.2 456 35.5
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 5.1e-71 272.7 485 33.2
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 1.1e-70 271.6 456 35.5
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 1.5e-70 271.2 455 34.9
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 3.3e-70 270.0 457 33.9
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 4.8e-69 266.2 457 36.5
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 1.5e-67 261.2 445 37.3
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 5.4e-65 252.7 457 35.9
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 5.6e-62 242.7 458 33.8
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 2.8e-61 240.4 458 35.2
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 2.0e-59 234.2 458 33.4
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 2.0e-59 234.2 403 35.0
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 9.9e-59 231.9 458 32.5
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 9.9e-59 231.9 458 32.5
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 7.1e-57 225.7 480 32.1
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 3.0e-55 220.3 448 33.9
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 2.6e-51 207.2 509 31.6
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 4.9e-50 203.0 506 29.1
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 6.5e-50 202.6 449 32.3
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-49 200.7 459 31.2
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 7.9e-48 195.7 453 29.6
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 6.7e-47 192.6 290 36.2
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 6.7e-47 192.6 458 31.0
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.1e-46 191.8 201 49.8
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 7.4e-46 189.1 457 29.5
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 9.7e-46 188.7 458 29.7
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.1e-44 185.3 324 35.8
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.3e-42 178.3 231 42.9
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 1.2e-40 171.8 314 33.4
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 2.7e-40 170.6 285 33.3
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 4.6e-40 169.9 187 48.7
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 2.3e-39 167.5 278 36.0
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 5.1e-39 166.4 396 32.1
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 1.5e-30 138.3 258 35.3
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 4.4e-30 136.7 430 26.3
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 5.7e-30 136.3 323 30.7
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 2.8e-29 134.0 236 36.9
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 1.5e-27 128.3 291 30.9
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.7e-24 116.7 348 24.4
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.9e-23 113.6 415 23.6
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 6.7e-23 112.8 184 39.7
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.1e-22 112.1 450 26.0
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.3e-22 110.5 347 24.2
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.3e-21 106.3 372 23.9
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 2.4e-20 104.4 420 25.5
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 9.1e-20 102.4 371 25.3
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.6e-19 101.7 272 27.9
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 5.9e-19 99.8 227 32.2
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 5.0e-18 96.7 267 27.3
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 8.5e-18 95.9 504 24.2
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.1e-17 95.5 285 25.6
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 7.2e-17 92.8 116 42.2
Pp3c21_1000 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.7e-16 90.1 472 22.0
Pp3c21_1020 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.4e-12 78.6 159 28.9
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.8e-12 78.2 311 24.1
unitig_699.g19307 Utricularia gibba HOM05D006588 ORTHO05D008272 1.6e-11 75.1 129 37.2
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 2.7e-11 74.3 72 45.8
Pp3s358_10 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.6e-08 65.1 195 28.2
Pp3s358_1 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.4e-07 62.0 113 27.4
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.2e-07 60.1 49 51.0
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.2e-07 60.1 49 51.0
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-06 58.5 71 42.3
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.4e-06 57.0 70 41.4
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.7e-06 56.6 62 41.9


User provided reference genes

Program Settings