Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.1e-280 968.4 491 100.0
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 7.2e-180 634.4 480 68.5
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.1e-164 583.9 484 62.6
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.2e-163 580.5 474 63.5
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 2.7e-163 579.3 439 65.8
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.7e-163 579.3 458 64.8
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.8e-162 576.6 430 65.6
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 4.0e-162 575.5 458 64.2
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.2e-161 573.9 429 66.4
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 3.4e-161 572.4 487 61.4
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 4.4e-161 572.0 480 61.0
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 5.7e-161 571.6 393 71.2
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 9.7e-161 570.9 463 63.3
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 9.7e-161 570.9 483 62.3
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.7e-160 570.1 411 67.6
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.7e-160 570.1 463 63.5
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.7e-160 570.1 448 64.1
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 2.2e-160 569.7 471 61.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 3.7e-160 568.9 432 65.0
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 6.3e-160 568.2 463 63.3
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.3e-160 568.2 473 61.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.4e-159 567.0 458 63.1
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.8e-159 566.6 477 61.8
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.1e-159 565.5 474 60.5
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 4.1e-159 565.5 402 67.9
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.2e-158 563.9 477 61.4
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.2e-158 563.9 389 70.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.2e-158 563.9 491 61.1
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 2.0e-158 563.1 471 61.8
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 2.7e-158 562.8 422 66.1
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.5e-158 562.0 409 68.2
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 5.9e-158 561.6 470 61.5
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.7e-157 560.1 483 60.2
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.7e-157 560.1 407 67.3
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.2e-157 559.7 475 60.8
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 5.0e-157 558.5 450 63.6
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 2.5e-156 556.2 453 63.1
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 3.2e-156 555.8 399 66.9
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.2e-156 555.4 475 60.8
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 5.5e-156 555.1 428 65.2
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 7.2e-156 554.7 392 66.3
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.1e-155 553.1 393 68.4
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.1e-155 553.1 389 68.9
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 3.6e-155 552.4 469 61.6
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 4.7e-155 552.0 392 67.3
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 6.1e-155 551.6 479 58.9
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 6.1e-155 551.6 431 64.5
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.1e-155 551.6 401 66.8
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 8.0e-155 551.2 454 61.9
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.0e-154 550.8 393 68.2
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 3.0e-154 549.3 410 66.3
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.0e-154 548.9 460 61.5
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 5.2e-154 548.5 465 60.4
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 6.8e-154 548.1 393 67.9
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.2e-153 547.4 474 59.1
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 4.4e-153 545.4 433 63.3
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 5.7e-153 545.0 447 62.4
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 9.8e-153 544.3 395 68.4
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.7e-152 543.5 395 68.4
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.2e-152 543.1 367 70.3
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 3.7e-152 542.3 471 60.3
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 3.7e-152 542.3 416 64.9
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 4.8e-152 542.0 485 59.0
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 8.3e-152 541.2 471 60.3
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.1e-151 540.8 396 66.2
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.4e-151 540.4 439 63.1
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.4e-151 540.4 439 63.1
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.4e-151 540.4 472 59.3
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.4e-151 539.7 481 57.6
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.1e-151 538.9 405 65.2
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 9.1e-151 537.7 481 58.0
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 9.1e-151 537.7 405 64.9
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 9.1e-151 537.7 465 59.4
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 3.5e-150 535.8 393 66.2
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 5.9e-150 535.0 471 58.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 7.7e-150 534.6 395 65.6
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.0e-149 534.3 437 62.2
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.0e-149 534.3 437 62.2
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.0e-149 534.3 410 65.4
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.3e-149 533.9 391 67.8
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 2.9e-149 532.7 482 57.9
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 2.9e-149 532.7 475 59.4
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.8e-149 532.3 394 65.7
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.3e-148 529.3 487 58.1
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 4.2e-148 528.9 398 64.6
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 4.2e-148 528.9 392 64.8
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 5.5e-148 528.5 407 63.1
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.6e-147 526.9 426 63.1
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 2.1e-147 526.6 467 58.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 4.7e-147 525.4 477 58.1
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 4.7e-147 525.4 477 58.1
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 6.1e-147 525.0 438 61.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 6.1e-147 525.0 473 58.4
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 6.1e-147 525.0 473 58.4
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 6.1e-147 525.0 492 58.1
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.0e-146 524.2 473 58.4
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.0e-146 524.2 487 57.5
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-146 523.1 482 58.1
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 3.0e-146 522.7 484 56.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.2e-146 521.9 482 58.1
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-145 520.4 469 57.8
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 2.6e-145 519.6 428 62.6
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 7.5e-145 518.1 570 51.2
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 9.8e-145 517.7 458 58.5
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.8e-144 516.2 483 57.8
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 8.3e-144 514.6 488 56.8
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.3e-144 514.6 482 58.3
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.0e-141 507.7 504 53.2
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 3.9e-141 505.8 418 62.9
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.0e-141 505.4 428 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.8e-138 495.0 406 57.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.2e-137 494.2 393 63.1
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.6e-137 493.0 462 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.4e-137 492.7 396 59.3
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.3e-136 490.7 455 53.6
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 2.9e-136 489.6 389 62.2
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 5.4e-135 485.3 420 58.3
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 7.0e-135 485.0 484 55.4
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 9.2e-135 484.6 505 53.1
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.2e-134 484.2 355 66.8
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 2.3e-133 479.9 354 65.5
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 3.9e-133 479.2 337 67.4
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.8e-130 470.3 506 53.8
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.1e-130 469.5 389 59.9
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.6e-129 466.5 460 57.2
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.4e-127 459.9 463 55.9
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.1e-124 451.1 561 48.1
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.9e-124 450.3 450 56.0
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 4.3e-124 449.1 411 57.2
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 7.3e-124 448.4 464 54.1
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.6e-123 447.2 433 56.8
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-122 444.1 485 51.1
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.5e-121 440.7 417 58.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 9.9e-121 438.0 485 51.8
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 9.9e-121 438.0 341 64.8
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 6.4e-120 435.3 480 52.7
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.4e-119 433.3 364 60.7
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.6e-118 429.1 384 60.7
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.3e-116 421.8 349 62.8
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.0e-114 416.0 369 61.2
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.5e-113 414.1 428 53.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.0e-113 413.7 338 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.7e-112 410.6 356 56.2
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.5e-108 396.7 373 59.5
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 1.8e-106 390.6 433 53.6
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.7e-104 384.0 467 48.8
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 5.4e-95 352.4 360 54.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.8e-93 347.4 296 63.9
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 5.3e-90 335.9 210 71.9
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 9.3e-79 298.5 409 43.5
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.9e-63 247.7 254 55.9
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.8e-61 238.8 288 51.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.2e-55 220.3 245 54.3
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.1e-54 216.1 155 66.5
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 5.7e-52 209.5 285 47.7
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.1e-47 195.3 114 71.1
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.9e-47 194.5 368 35.3
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.8e-45 188.0 163 52.8
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 5.2e-45 186.4 130 61.5
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.8e-40 170.2 110 65.5
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.1e-39 168.7 225 51.6
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.6e-38 163.7 418 31.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.0e-21 109.0 183 35.0
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.3e-21 107.8 71 62.0
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.3e-16 92.0 207 31.9
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.9e-15 88.2 48 77.1
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 2.1e-14 84.7 53 81.1
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 7.8e-09 66.2 63 47.6
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.5e-07 62.0 38 68.4
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.2e-06 58.9 39 61.5
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 8.1e-06 56.2 166 29.5


User provided reference genes

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