Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.1e-130 469.9 238 100.0
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.4e-64 250.4 227 60.4
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 4.1e-64 248.8 213 62.0
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.6e-63 246.9 227 58.6
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.0e-63 246.5 211 62.6
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.7e-63 246.1 238 55.5
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 5.9e-63 245.0 226 58.0
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 8.6e-62 241.1 223 58.7
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 8.6e-62 241.1 214 59.8
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.1e-61 240.7 224 60.7
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.1e-61 240.7 170 68.2
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.5e-61 240.4 230 55.7
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 3.3e-61 239.2 236 52.1
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 9.5e-61 237.7 234 54.7
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.6e-60 236.9 154 72.7
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.6e-60 236.9 223 60.1
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.1e-60 236.5 226 54.9
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 2.8e-60 236.1 235 52.3
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.8e-60 236.1 208 57.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.8e-60 236.1 227 56.8
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.6e-60 235.7 226 55.3
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 8.0e-60 234.6 229 57.6
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 8.0e-60 234.6 244 52.9
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 8.0e-60 234.6 232 55.2
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.0e-59 234.2 223 56.1
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.0e-59 234.2 217 57.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.4e-59 233.8 217 55.3
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.4e-59 233.8 226 54.4
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.4e-59 233.8 226 54.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.4e-59 233.8 200 59.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.4e-59 233.8 232 57.3
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.4e-59 233.8 216 59.7
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.3e-59 233.0 206 57.8
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 4.0e-59 232.3 228 54.8
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.2e-59 231.9 239 52.3
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 8.9e-59 231.1 227 58.6
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 8.9e-59 231.1 224 54.0
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.5e-58 230.3 158 70.3
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.0e-58 229.9 234 52.1
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.0e-58 229.9 234 52.1
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 2.6e-58 229.6 227 53.7
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.6e-58 229.6 231 54.1
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 3.4e-58 229.2 225 56.4
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 5.8e-58 228.4 225 53.8
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 7.5e-58 228.0 188 58.0
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 7.5e-58 228.0 157 68.8
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 9.8e-58 227.6 219 56.6
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 9.8e-58 227.6 221 56.6
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.3e-57 227.3 232 53.9
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.3e-57 227.3 228 55.3
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.7e-57 226.9 230 50.9
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.7e-57 226.9 212 58.5
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.7e-57 226.9 230 52.6
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 2.2e-57 226.5 163 67.5
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.2e-57 226.5 218 55.0
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.2e-57 226.5 238 52.5
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.9e-57 226.1 223 54.7
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.9e-57 226.1 238 52.1
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 3.7e-57 225.7 183 60.1
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.9e-57 225.3 225 56.0
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.9e-57 225.3 225 56.0
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 4.9e-57 225.3 223 52.9
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.4e-57 224.9 229 53.3
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 6.4e-57 224.9 225 53.3
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 6.4e-57 224.9 225 53.3
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 6.4e-57 224.9 190 60.5
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 6.4e-57 224.9 227 55.1
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.4e-57 224.9 230 52.2
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 6.4e-57 224.9 225 53.8
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.4e-56 223.8 230 50.9
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.4e-56 223.8 227 55.9
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 2.4e-56 223.0 236 51.3
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 2.4e-56 223.0 144 72.9
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.2e-56 222.6 207 56.0
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 3.2e-56 222.6 237 52.3
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 4.1e-56 222.2 232 50.9
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.2e-55 220.7 214 55.1
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.2e-55 220.7 212 57.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 4.6e-55 218.8 228 50.9
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 6.0e-55 218.4 250 50.4
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 6.0e-55 218.4 215 55.3
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.0e-54 217.6 202 55.9
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.7e-54 216.9 231 53.7
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.3e-54 216.5 227 53.3
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.3e-54 216.5 252 48.0
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.0e-54 216.1 204 55.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.9e-54 215.7 149 70.5
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 3.9e-54 215.7 213 54.9
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 3.9e-54 215.7 229 53.7
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 5.0e-54 215.3 202 55.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 5.6e-53 211.8 245 48.6
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 9.5e-53 211.1 148 70.3
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.6e-52 210.3 219 52.5
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.1e-52 209.9 204 55.4
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.1e-51 207.6 215 53.5
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.1e-51 207.6 209 56.5
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.4e-50 202.2 233 49.4
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.8e-50 201.8 232 48.7
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.7e-49 200.3 209 54.1
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.4e-48 196.4 146 66.4
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 5.4e-48 195.3 135 65.9
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.7e-47 193.0 207 52.7
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 4.6e-47 192.2 126 69.8
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.1e-45 187.6 180 60.0
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.5e-45 187.2 219 50.7
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.5e-45 187.2 197 53.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.8e-44 183.0 187 50.3
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 4.4e-42 175.6 145 57.9
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.9e-41 172.2 133 60.9
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 6.4e-41 171.8 131 60.3
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 9.2e-40 167.9 111 71.2
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 9.5e-37 157.9 132 54.5
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 9.5e-37 157.9 221 43.9
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.6e-36 157.1 136 53.7
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.6e-31 139.0 165 44.8
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 4.6e-31 139.0 156 50.6
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.3e-29 132.9 132 52.3
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 6.2e-28 128.6 177 44.6
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.0e-27 125.9 95 64.2
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.4e-26 122.9 87 70.1
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.8e-25 119.4 149 47.7
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.9e-24 117.1 71 70.4
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.4e-19 100.9 67 71.6
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.3e-17 94.4 142 35.2
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.4e-16 90.9 115 46.1
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 7.1e-16 88.6 103 46.6
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 5.1e-14 82.4 59 67.8
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 4.3e-13 79.3 54 70.4
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 5.3e-11 72.4 107 43.0
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 2.7e-07 60.1 214 29.4
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 7.9e-07 58.5 142 29.6
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 2.3e-06 57.0 36 69.4


User provided reference genes

Program Settings