Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003903 Vanilla planifolia HOM05D007704 ORTHO05D009758 2.9e-79 298.5 150 100.0
HPP92_003909 Vanilla planifolia HOM05D007704 ORTHO05D009758 4.1e-78 294.7 150 97.3
CDE09G0200 Ceratophyllum demersum HOM05D007704 ORTHO05D009758 3.2e-14 82.4 149 33.6
MBI07_g07812_MAGBIO Magnolia biondii HOM05D007704 ORTHO05D009758 7.9e-13 77.8 157 32.5
Os01g0246500 Oryza sativa ssp. japonica HOM05D007704 ORTHO05D009758 3.9e-12 75.5 159 33.3
TAR626G0172 Trochodendron aralioides HOM05D007704 ORTHO05D009758 6.7e-12 74.7 162 32.1
Glyma.08G308800 Glycine max HOM05D007704 ORTHO05D009758 1.1e-11 73.9 129 39.5
Migut.M00569 Erythranthe guttata HOM05D007704 ORTHO05D009758 3.3e-11 72.4 133 35.3
Glyma.18G107800 Glycine max HOM05D007704 ORTHO05D009758 4.3e-11 72.0 137 35.0
VMungo0540G0710 Vigna mungo HOM05D007704 ORTHO05D009758 5.7e-11 71.6 122 37.7
Ca_14608_v3 Cicer arietinum L. HOM05D007704 ORTHO05D009758 9.7e-11 70.9 145 32.4
Psat0s3897g0040 Pisum sativum HOM05D007704 ORTHO05D009758 1.3e-10 70.5 145 32.4
RcHm_v2.0_Chr2g0151721 Rosa chinensis HOM05D007704 ORTHO05D009758 1.3e-10 70.5 170 28.8
Aqoxy4G00112 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 1.7e-10 70.1 132 33.3
arahy.Tifrunner.gnm1.ann1.I86J5P Arachis hypogaea HOM05D007704 ORTHO05D009758 2.2e-10 69.7 124 35.5
A09p66950 Brassica napus HOM05D000230 ORTHO05D000176 2.2e-10 69.7 113 37.2
BraA09t42030Z Brassica rapa HOM05D000230 ORTHO05D000176 2.2e-10 69.7 113 37.2
Medtr3g047590 Medicago truncatula HOM05D007704 ORTHO05D009758 2.8e-10 69.3 149 30.9
Prupe.3G174900 Prunus persica HOM05D007704 ORTHO05D009758 3.7e-10 68.9 157 31.8
TPR.G16762 Trifolium pratense HOM05D007704 ORTHO05D009758 3.7e-10 68.9 150 32.0
ATR0757G094 Amborella trichopoda HOM05D007704 ORTHO05D009758 4.8e-10 68.6 141 32.6
BcaC07g42062 Brassica carinata HOM05D007704 ORTHO05D009758 4.8e-10 68.6 123 33.3
Nn3g20648 Nelumbo nucifera HOM05D007704 ORTHO05D009758 6.3e-10 68.2 140 31.4
SGA_v2.0_scaffold70G23621 Striga asiatica HOM05D007704 ORTHO05D009758 6.3e-10 68.2 132 31.1
arahy.Tifrunner.gnm1.ann1.Q0GQHR Arachis hypogaea HOM05D007704 ORTHO05D009758 1.8e-09 66.6 124 34.7
Sp1g05260 Schrenkiella parvula HOM05D007704 ORTHO05D009758 1.8e-09 66.6 113 34.5
MSTRG.15037 Avicennia marina HOM05D007704 ORTHO05D009758 3.1e-09 65.9 140 30.0
Thhalv10009066m.g Eutrema salsugineum HOM05D007704 ORTHO05D009758 4.1e-09 65.5 113 35.4
QL08p044652 Quercus lobata HOM05D007704 ORTHO05D009758 5.3e-09 65.1 128 32.8
Ciclev10032332m.g Citrus clementina HOM05D007704 ORTHO05D009758 6.9e-09 64.7 127 32.3
THA.LOC104800828 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 6.9e-09 64.7 128 36.7
Phvul.006G032200 Phaseolus vulgaris HOM05D007704 ORTHO05D009758 9.1e-09 64.3 122 33.6
C08p51180 Brassica napus HOM05D007704 ORTHO05D009758 1.2e-08 63.9 113 34.5
BolC8t52645H Brassica oleracea HOM05D000230 ORTHO05D000176 1.2e-08 63.9 113 34.5
FvH4_6g38470 Fragaria vesca HOM05D007704 ORTHO05D009758 1.2e-08 63.9 175 26.3
Sed0015338 Sechium edule HOM05D007704 ORTHO05D009758 1.2e-08 63.9 145 33.1
THA.LOC104827393 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 1.5e-08 63.5 119 32.8
Haze_13518 Corylus avellana HOM05D007704 ORTHO05D009758 2.0e-08 63.2 137 31.4
FAN09G1582 Fragaria x ananassa HOM05D007704 ORTHO05D009758 2.0e-08 63.2 182 24.7
Cpa.g.sc50.98 Carica papaya HOM05D007704 ORTHO05D009758 2.6e-08 62.8 155 31.6
FAN02G0747 Fragaria x ananassa HOM05D007704 ORTHO05D009758 2.6e-08 62.8 175 26.3
COL.COLO4_08458 Corchorus olitorius HOM05D007704 ORTHO05D009758 3.4e-08 62.4 157 30.6
Gohir.D04G035566 Gossypium hirsutum HOM05D007704 ORTHO05D009758 4.5e-08 62.0 126 34.1
Peaxi162Scf00789g00013 Petunia axillaris HOM05D007704 ORTHO05D009758 4.5e-08 62.0 127 32.3
Cc05_g09660 Coffea canephora HOM05D007704 ORTHO05D009758 5.9e-08 61.6 170 31.2
Potri.002G058800 Populus trichocarpa HOM05D007704 ORTHO05D009758 7.7e-08 61.2 132 31.8
Carub.0001s0586 Capsella rubella HOM05D007704 ORTHO05D009758 1.0e-07 60.8 113 31.9
CARHR006110 Cardamine hirsuta HOM05D007704 ORTHO05D009758 1.0e-07 60.8 113 35.4
FvH4_6g38482 Fragaria vesca HOM05D007704 ORTHO05D009758 1.0e-07 60.8 174 27.0
FAN14G3331 Fragaria x ananassa HOM05D007704 ORTHO05D009758 1.0e-07 60.8 174 27.0
Gohir.A05G379900 Gossypium hirsutum HOM05D007704 ORTHO05D009758 1.0e-07 60.8 126 33.3
MD17G1137700 Malus domestica HOM05D007704 ORTHO05D009758 1.0e-07 60.8 137 29.9
PGR042G3448 Punica granatum HOM05D007704 ORTHO05D009758 1.3e-07 60.5 118 30.5
Gorai.012G040100 Gossypium raimondii HOM05D007704 ORTHO05D009758 1.7e-07 60.1 126 34.1
Zm00001eb118790 Zea mays HOM05D007704 ORTHO05D009758 2.2e-07 59.7 132 34.1
AL1G16520 Arabidopsis lyrata HOM05D007704 ORTHO05D009758 2.9e-07 59.3 115 33.9
GSVIVG01020855001 Vitis vinifera HOM05D007704 ORTHO05D009758 2.9e-07 59.3 161 30.4
DCAR_013319 Daucus carota HOM05D007704 ORTHO05D009758 5.0e-07 58.5 141 30.5
Thecc.01G163800 Theobroma cacao HOM05D007704 ORTHO05D009758 5.0e-07 58.5 123 32.5
Eucgr.A01992 Eucalyptus grandis HOM05D007704 ORTHO05D009758 6.5e-07 58.2 130 30.0
Sabra02G0047700 Salix brachista HOM05D007704 ORTHO05D009758 8.5e-07 57.8 132 30.3
Hund07540 Selenicereus undatus HOM05D008449 ORTHO05D010615 1.1e-06 57.4 129 31.0
TWI59G0036 Tripterygium wilfordii HOM05D007704 ORTHO05D009758 1.1e-06 57.4 166 30.7
Sc16g0011630 Simmondsia chinensis HOM05D007704 ORTHO05D009758 1.4e-06 57.0 139 34.5
Atru.chr6.2068_Atru.chr6.2069 Acer truncatum HOM05D007704 ORTHO05D009758 1.9e-06 56.6 132 29.5
AT1G06500 Arabidopsis thaliana HOM05D007704 ORTHO05D009758 1.9e-06 56.6 115 32.2
PGSC0003DMG400007847 Solanum tuberosum HOM05D007704 ORTHO05D009758 3.2e-06 55.8 115 28.7


User provided reference genes

Program Settings