Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 4.9e-106 387.9 204 100.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.1e-101 372.5 206 96.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.4e-52 210.3 202 56.9
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.8e-52 209.9 154 66.9
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.0e-52 207.6 175 60.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.2e-51 207.2 154 65.6
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.5e-51 206.8 154 64.9
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.8e-51 204.9 162 63.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.0e-50 204.1 152 67.8
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.3e-50 203.8 151 66.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.3e-50 203.8 152 68.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.3e-50 203.8 209 55.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-50 203.4 154 66.9
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.7e-50 203.4 155 66.5
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.7e-50 203.4 151 66.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.7e-50 203.4 165 63.0
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.2e-50 203.0 157 65.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.2e-50 203.0 156 64.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.9e-50 202.6 207 55.6
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 3.8e-50 202.2 156 64.1
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.8e-50 202.2 128 75.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.8e-50 202.2 206 53.4
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.8e-50 202.2 154 66.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.9e-50 201.8 156 64.1
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.9e-50 201.8 156 64.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 8.4e-50 201.1 156 64.1
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 8.4e-50 201.1 156 64.1
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.4e-50 201.1 155 65.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.1e-49 200.7 156 64.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-49 200.7 194 56.2
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.4e-49 200.3 124 76.6
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.4e-49 200.3 154 63.6
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.9e-49 199.9 153 65.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.9e-49 199.9 156 64.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.9e-49 199.9 156 64.1
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.9e-49 199.9 156 64.1
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.9e-49 199.9 155 64.5
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.9e-49 199.9 166 63.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.9e-49 199.9 155 64.5
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.9e-49 199.9 155 64.5
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.9e-49 199.9 155 64.5
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.5e-49 199.5 159 66.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.5e-49 199.5 156 63.5
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.5e-49 199.5 155 64.5
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.5e-49 199.5 155 64.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.5e-49 199.5 155 64.5
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.5e-49 199.5 154 68.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.5e-49 199.5 155 64.5
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.5e-49 199.5 154 64.9
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.5e-49 199.5 124 75.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.2e-49 199.1 156 62.2
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.2e-49 199.1 156 63.5
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.2e-49 199.1 155 64.5
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 5.5e-49 198.4 153 66.0
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 5.5e-49 198.4 156 62.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 5.5e-49 198.4 155 64.5
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 5.5e-49 198.4 165 63.0
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 7.1e-49 198.0 154 63.6
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 7.1e-49 198.0 157 65.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 7.1e-49 198.0 156 62.8
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 9.3e-49 197.6 119 79.8
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 9.3e-49 197.6 122 77.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.3e-49 197.6 159 62.9
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 9.3e-49 197.6 154 61.7
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 9.3e-49 197.6 154 63.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.2e-48 197.2 165 61.2
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-48 197.2 151 64.9
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.1e-48 196.4 154 64.3
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.1e-48 196.4 154 63.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 2.1e-48 196.4 154 64.3
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.7e-48 196.1 124 74.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.7e-48 196.1 155 63.2
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.6e-48 195.3 159 62.9
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 4.6e-48 195.3 154 63.6
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 4.6e-48 195.3 154 63.0
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 6.0e-48 194.9 153 64.7
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 6.0e-48 194.9 153 62.1
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 7.9e-48 194.5 124 73.4
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 7.9e-48 194.5 124 73.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.0e-47 194.1 155 63.2
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.3e-47 193.7 168 60.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.3e-47 193.7 154 63.0
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.3e-47 193.7 154 67.5
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.0e-47 192.6 165 60.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.9e-47 192.2 153 60.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 3.9e-47 192.2 154 63.6
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.7e-47 191.4 154 61.7
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 8.7e-47 191.0 154 63.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 8.7e-47 191.0 154 62.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.5e-46 189.5 126 72.2
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.3e-46 189.1 124 71.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.3e-46 188.7 158 63.9
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 7.4e-46 188.0 127 73.2
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.6e-45 186.8 126 69.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.3e-45 184.9 127 68.5
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 6.9e-44 181.4 118 70.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 9.0e-44 181.0 125 69.6
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-43 180.6 144 63.2
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-43 180.6 144 63.2
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-43 180.6 144 63.2
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-43 180.6 119 72.3
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.5e-43 180.3 127 66.9
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 3.4e-43 179.1 142 62.0
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.4e-43 179.1 126 67.5
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.0e-42 177.6 118 69.5
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 2.5e-41 172.9 121 66.9
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 3.2e-41 172.6 177 52.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 3.2e-41 172.6 119 67.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 9.3e-41 171.0 112 71.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.1e-40 169.9 149 59.1
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.1e-40 168.3 155 58.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.9e-39 165.6 128 60.9
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.9e-39 165.6 128 60.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 6.7e-39 164.9 101 78.2
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-38 164.1 163 56.4
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.9e-38 163.3 137 58.4
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 5.3e-36 155.2 168 48.8
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 5.9e-35 151.8 159 51.6
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.3e-34 150.6 121 58.7
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 3.8e-34 149.1 228 40.4
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.8e-34 149.1 115 59.1
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.5e-33 145.2 116 56.9
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.6e-32 143.7 93 71.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.1e-32 143.3 116 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 7.9e-32 141.4 115 57.4
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 6.7e-31 138.3 106 56.6
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 7.4e-30 134.8 80 81.2
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.4e-28 130.6 115 57.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.2e-26 123.2 96 58.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.5e-25 119.8 138 50.0
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.1e-24 116.7 80 70.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.7e-22 108.6 67 73.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.7e-22 108.6 67 73.1
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 6.3e-13 78.6 62 58.1
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.4e-12 76.6 75 53.3
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 7.7e-11 71.6 50 66.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.7e-08 63.2 67 47.8
Cre12.g520600 Chlamydomonas reinhardtii HOM05D005092 ORTHO05D006073 7.5e-06 55.1 124 29.0


User provided reference genes

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