Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003815 Vanilla planifolia HOM05D017260 ORTHO05D014237 5.0e-219 764.6 536 100.0
Zm00001eb111970 Zea mays HOM05D017260 ORTHO05D014237 2.5e-32 144.4 461 51.4
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 6.9e-27 126.3 454 49.1
Zm00001eb066340 Zea mays HOM05D017260 ORTHO05D014237 2.1e-23 114.8 474 43.2
Zm00001eb074990 Zea mays HOM05D051871 ORTHO05D014237 4.7e-23 113.6 200 32.0
Os03g0216300 Oryza sativa ssp. japonica HOM05D053449 ORTHO05D014237 4.8e-20 103.6 165 37.6
Os04g0675600 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 8.5e-17 92.8 239 27.2
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.3e-11 73.6 144 29.2
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.0e-10 71.6 144 29.2
Os05g0393900 Oryza sativa ssp. japonica HOM05D051871 ORTHO05D014237 2.0e-10 71.6 155 28.4
CSS0041874 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D006025 7.7e-10 69.7 130 30.8
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 1.0e-09 69.3 143 28.7
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 1.3e-09 68.9 147 28.6
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 1.7e-09 68.6 163 24.5
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 5.0e-09 67.0 141 29.8
Nitab4.5_0010755g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 5.0e-09 67.0 132 28.8
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 6.5e-09 66.6 158 27.8
HPP92_009300 Vanilla planifolia HOM05D017260 ORTHO05D014237 6.5e-09 66.6 349 54.7
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 1.1e-08 65.9 126 33.3
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 1.9e-08 65.1 148 27.0
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 1.9e-08 65.1 144 28.5
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 1.9e-08 65.1 152 27.6
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 2.5e-08 64.7 141 27.0
ClCG09G021740 Citrullus lanatus HOM05D016535 ORTHO05D000090 3.2e-08 64.3 232 23.7
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.2e-08 64.3 148 27.7
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 3.2e-08 64.3 148 27.7
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 4.2e-08 63.9 143 29.4
Nn7g37731 Nelumbo nucifera HOM05D030124 ORTHO05D014237 4.2e-08 63.9 490 44.9
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 5.5e-08 63.5 152 27.6
SalBow1G1723 Salvia bowleyana HOM05D007291 ORTHO05D009038 7.2e-08 63.2 201 23.9
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 7.2e-08 63.2 157 24.8
Actinidia37616 Actinidia chinensis HOM05D000001 ORTHO05D006025 9.4e-08 62.8 130 29.2
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 1.2e-07 62.4 160 25.0
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 1.2e-07 62.4 148 27.7
Oeu015150.1 Olea europaea HOM05D000001 ORTHO05D000003 1.2e-07 62.4 234 25.6
Nitab4.5_0006665g0020 Nicotiana tabacum HOM05D000162 ORTHO05D000090 1.6e-07 62.0 127 29.9
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 2.1e-07 61.6 78 38.5
Cc02_g34440 Coffea canephora HOM05D000162 ORTHO05D000090 2.1e-07 61.6 149 26.8
Nitab4.5_0003318g0050 Nicotiana tabacum HOM05D000162 ORTHO05D000090 2.1e-07 61.6 127 29.1
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 2.7e-07 61.2 78 38.5
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 2.7e-07 61.2 148 28.4
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 2.7e-07 61.2 162 26.5
AagrBONN_evm.TU.Sc2ySwM_117.2924__2925 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-07 60.8 214 23.8
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 3.6e-07 60.8 148 26.4
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 3.6e-07 60.8 144 27.1
Peaxi162Scf00939g00023 Petunia axillaris HOM05D007291 ORTHO05D009038 3.6e-07 60.8 126 32.5
Prupe.6G093300 Prunus persica HOM05D000162 ORTHO05D000090 4.7e-07 60.5 146 26.7
TWI36G0278 Tripterygium wilfordii HOM05D000001 ORTHO05D009485 4.7e-07 60.5 129 28.7
CiPaw.03G055100 Carya illinoinensis HOM05D000001 ORTHO05D000003 6.1e-07 60.1 133 31.6
Cc02_g34450 Coffea canephora HOM05D000162 ORTHO05D000090 6.1e-07 60.1 149 26.8
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 6.1e-07 60.1 145 28.3
Cpa.g.c26337.2 Carica papaya HOM05D000001 ORTHO05D010091 8.0e-07 59.7 217 24.0
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 8.0e-07 59.7 153 28.1
Oeu018740.1 Olea europaea HOM05D000001 ORTHO05D000003 8.0e-07 59.7 136 25.0
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.0e-06 59.3 152 27.0
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 1.0e-06 59.3 137 30.7
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.0e-06 59.3 147 23.1
Duzib106G0549 Durio zibethinus HOM05D007172 ORTHO05D018188 1.0e-06 59.3 161 24.2
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 1.0e-06 59.3 132 26.5
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 1.0e-06 59.3 148 26.4
SalBow1G7336 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.0e-06 59.3 156 27.6
vmacro15513 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.0e-06 59.3 127 29.1
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 1.4e-06 58.9 148 27.0
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 1.4e-06 58.9 175 21.7
Dinv18564 Davidia involucrata HOM05D000001 ORTHO05D000003 1.8e-06 58.5 162 25.9
Lsat_1_v5_gn_3_115200 Lactuca sativa HOM05D000162 ORTHO05D000090 1.8e-06 58.5 183 26.2
Sc12g0006450 Simmondsia chinensis HOM05D000001 ORTHO05D006025 1.8e-06 58.5 131 26.7
Aa31LG8G3100 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.3e-06 58.2 130 27.7
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 2.3e-06 58.2 133 30.1
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 2.3e-06 58.2 141 27.0
FAN16G2089 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.3e-06 58.2 133 29.3
Hma1.2p1_0712F.1_g207600 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 2.3e-06 58.2 157 27.4
Oeu002723.1 Olea europaea HOM05D007956 ORTHO05D010152 2.3e-06 58.2 149 23.5
QL02p071520 Quercus lobata HOM05D000001 ORTHO05D000003 2.3e-06 58.2 129 27.9
Sp5g29730 Schrenkiella parvula HOM05D002453 ORTHO05D002107 2.3e-06 58.2 148 25.7
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 2.3e-06 58.2 153 27.5
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 2.3e-06 58.2 175 21.7
Cc07_g19010 Coffea canephora HOM05D000162 ORTHO05D000090 3.0e-06 57.8 133 29.3
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 3.0e-06 57.8 133 28.6
FvH4_3g39890 Fragaria vesca HOM05D000162 ORTHO05D000090 3.0e-06 57.8 132 25.8
Peaxi162Scf00129g01534 Petunia axillaris HOM05D000162 ORTHO05D000090 3.0e-06 57.8 132 25.0
Peaxi162Scf00154g00039 Petunia axillaris HOM05D000162 ORTHO05D000090 3.0e-06 57.8 128 27.3
Peaxi162Scf00154g00321 Petunia axillaris HOM05D000162 ORTHO05D000090 3.0e-06 57.8 149 25.5
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 3.0e-06 57.8 74 37.8
TWI74G0215 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 3.0e-06 57.8 180 22.2
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 4.0e-06 57.4 112 25.9
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 4.0e-06 57.4 141 27.0
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 4.0e-06 57.4 156 25.6
Nitab4.5_0000556g0140 Nicotiana tabacum HOM05D000162 ORTHO05D000090 4.0e-06 57.4 172 26.2
Potri.015G034900 Populus trichocarpa HOM05D000001 ORTHO05D006025 4.0e-06 57.4 133 28.6
SEGI_15100 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 4.0e-06 57.4 144 26.4
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 5.2e-06 57.0 112 25.9
Manes.12G078800 Manihot esculenta HOM05D000001 ORTHO05D000003 5.2e-06 57.0 163 26.4
Medtr6g445300 Medicago truncatula HOM05D000162 ORTHO05D000090 5.2e-06 57.0 128 28.9
SMO107G0005 Selaginella moellendorffii HOM05D000001 ORTHO05D375160 5.2e-06 57.0 134 29.1
vmacro15514 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.2e-06 57.0 127 28.3
CSS0011438 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 6.7e-06 56.6 157 25.5
CSS0011829 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 6.7e-06 56.6 157 25.5
Ca_17355_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009485 6.7e-06 56.6 137 25.5
Ca_29617_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009485 6.7e-06 56.6 137 25.5
Cc02_g02220 Coffea canephora HOM05D000001 ORTHO05D000003 6.7e-06 56.6 214 23.4
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 6.7e-06 56.6 103 34.0
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 6.7e-06 56.6 103 31.1
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 6.7e-06 56.6 103 34.0
Lsat_1_v5_gn_5_20780 Lactuca sativa HOM05D000001 ORTHO05D006025 6.7e-06 56.6 131 27.5
Solyc02g011680.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 6.7e-06 56.6 239 24.3
unitig_21.g20398 Utricularia gibba HOM05D007291 ORTHO05D009038 6.7e-06 56.6 157 29.3
Ah.14g088580 Amaranthus hybridus HOM05D007291 ORTHO05D009038 8.8e-06 56.2 142 28.9
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 8.8e-06 56.2 128 28.1
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 8.8e-06 56.2 160 25.6
Migut.F00887 Erythranthe guttata HOM05D000162 ORTHO05D000090 8.8e-06 56.2 140 26.4
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 8.8e-06 56.2 125 28.0
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 8.8e-06 56.2 132 25.8
Nn3g16478 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.8e-06 56.2 127 30.7
Nn7g36479 Nelumbo nucifera HOM05D000001 ORTHO05D009667 8.8e-06 56.2 207 25.1
Nitab4.5_0004679g0050 Nicotiana tabacum HOM05D007291 ORTHO05D009038 8.8e-06 56.2 117 30.8
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 8.8e-06 56.2 206 22.8
QL09p045803 Quercus lobata HOM05D000001 ORTHO05D000003 8.8e-06 56.2 189 25.4
Sed0024711 Sechium edule HOM05D007291 ORTHO05D009038 8.8e-06 56.2 63 42.9
VMungo1215G0477 Vigna mungo HOM05D000001 ORTHO05D006025 8.8e-06 56.2 131 24.4


User provided reference genes

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