Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.7e-38 162.2 81 100.0
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 3.4e-26 121.3 72 76.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 3.2e-24 114.8 66 78.8
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 5.4e-24 114.0 73 71.2
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 9.2e-24 113.2 71 73.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.6e-23 112.5 79 67.1
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.6e-23 112.5 66 74.2
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 2.0e-23 112.1 74 67.6
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.0e-23 112.1 69 73.9
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 2.7e-23 111.7 77 66.2
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.7e-23 111.7 75 65.3
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 4.6e-23 110.9 71 71.8
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 5.9e-23 110.5 79 67.1
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 7.8e-23 110.2 66 74.2
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 7.8e-23 110.2 70 68.6
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 7.8e-23 110.2 73 69.9
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 1.0e-22 109.8 69 73.9
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 1.3e-22 109.4 71 70.4
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.7e-22 109.0 68 72.1
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 1.7e-22 109.0 68 73.5
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 3.0e-22 108.2 66 71.2
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 3.0e-22 108.2 80 63.8
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.0e-22 108.2 70 67.1
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 3.9e-22 107.8 63 74.6
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 3.9e-22 107.8 79 63.3
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 5.0e-22 107.5 73 65.8
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 5.0e-22 107.5 70 67.1
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 5.0e-22 107.5 70 67.1
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 6.6e-22 107.1 69 69.6
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 6.6e-22 107.1 71 70.4
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 8.6e-22 106.7 72 68.1
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 8.6e-22 106.7 79 60.8
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.1e-21 106.3 71 63.4
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.1e-21 106.3 71 67.6
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.1e-21 106.3 77 61.0
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.5e-21 105.9 69 71.0
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.9e-21 105.5 71 67.6
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 1.9e-21 105.5 68 72.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 3.3e-21 104.8 71 69.0
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 3.3e-21 104.8 72 66.7
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.3e-21 104.8 78 57.7
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 4.3e-21 104.4 69 69.6
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 5.6e-21 104.0 72 62.5
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 5.6e-21 104.0 72 63.9
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 5.6e-21 104.0 78 61.5
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 7.3e-21 103.6 80 57.5
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 7.3e-21 103.6 72 63.9
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 9.5e-21 103.2 71 67.6
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.2e-20 102.8 75 61.3
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 2.1e-20 102.1 73 64.4
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 2.1e-20 102.1 79 59.5
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 2.1e-20 102.1 79 59.5
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.8e-20 101.7 82 59.8
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 3.6e-20 101.3 74 60.8
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 4.7e-20 100.9 64 70.3
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 6.2e-20 100.5 78 62.8
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 6.2e-20 100.5 74 60.8
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 8.0e-20 100.1 67 64.2
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 8.0e-20 100.1 76 55.3
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.1e-19 99.8 72 65.3
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.1e-19 99.8 81 60.5
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.8e-19 99.0 74 59.5
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 2.3e-19 98.6 71 66.2
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 3.1e-19 98.2 72 61.1
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 8.9e-19 96.7 70 60.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.5e-18 95.9 71 59.2
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.6e-18 95.1 71 56.3
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.3e-17 92.8 69 59.4
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 3.7e-17 91.3 90 50.0
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.2e-15 86.3 78 51.3
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.5e-15 84.7 73 53.4
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.5e-15 84.7 76 51.3
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 6.0e-15 84.0 57 57.9
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 7.8e-15 83.6 57 57.9
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.3e-14 82.0 80 47.5
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 2.3e-14 82.0 105 41.9
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 8.6e-14 80.1 80 46.2
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.1e-13 79.7 66 51.5
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.1e-13 79.7 55 58.2
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.5e-13 79.3 73 50.7
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.3e-13 78.2 50 58.0
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 7.3e-13 77.0 48 60.4
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 7.3e-13 77.0 56 62.5
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.1e-12 75.5 73 53.4
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 2.8e-12 75.1 54 51.9
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 2.8e-12 75.1 54 51.9
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.6e-12 74.7 53 54.7
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 3.6e-12 74.7 73 50.7
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 6.2e-12 73.9 55 56.4
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.1e-11 73.2 56 51.8
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 1.4e-11 72.8 54 59.3
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.8e-11 72.4 53 58.5
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 2.3e-11 72.0 53 50.9
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 2.3e-11 72.0 53 50.9
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 3.1e-11 71.6 46 58.7
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 5.2e-11 70.9 79 41.8
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 5.2e-11 70.9 53 49.1
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 6.8e-11 70.5 58 51.7
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 6.8e-11 70.5 47 57.4
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 8.9e-11 70.1 53 47.2
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 8.9e-11 70.1 40 75.0
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.2e-10 69.7 49 55.1
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.2e-10 69.7 75 46.7
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 1.2e-10 69.7 46 60.9
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.5e-10 69.3 53 49.1
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 4.4e-10 67.8 73 43.8
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 4.4e-10 67.8 78 38.5
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 5.8e-10 67.4 52 53.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 7.5e-10 67.0 51 56.9
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 9.9e-10 66.6 61 45.9
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.3e-09 66.2 40 70.0
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.7e-09 65.9 49 55.1
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 2.2e-09 65.5 74 40.5
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 2.9e-09 65.1 42 57.1
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 2.9e-09 65.1 42 57.1
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 2.9e-09 65.1 42 57.1
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 3.7e-09 64.7 45 57.8
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 3.7e-09 64.7 49 55.1
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.1e-08 63.2 55 49.1
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.4e-08 62.0 45 48.9
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 5.4e-08 60.8 50 48.0
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 7.1e-08 60.5 38 57.9
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 7.1e-08 60.5 47 51.1
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.0e-06 56.6 38 57.9
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 2.3e-06 55.5 42 50.0
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.3e-06 55.5 45 51.1
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 3.0e-06 55.1 44 47.7


User provided reference genes

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