Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 6.8e-142 507.3 254 100.0
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.2e-21 107.8 229 34.1
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.7e-21 106.7 230 35.2
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 3.5e-21 106.3 224 35.3
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 1.7e-20 104.0 230 35.2
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 2.3e-20 103.6 250 30.0
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 3.9e-20 102.8 222 32.4
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 5.1e-20 102.4 316 30.7
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 5.1e-20 102.4 213 34.3
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 6.6e-20 102.1 245 31.8
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 6.6e-20 102.1 162 40.1
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.9e-19 100.5 288 28.5
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.5e-19 100.1 257 30.0
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 3.3e-19 99.8 219 32.4
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 4.3e-19 99.4 258 29.8
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 5.6e-19 99.0 302 30.1
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 5.6e-19 99.0 309 28.8
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 9.6e-19 98.2 223 32.7
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.3e-18 97.8 216 33.3
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.3e-18 97.8 216 33.3
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.3e-18 97.8 219 32.0
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 2.1e-18 97.1 259 29.3
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 2.1e-18 97.1 220 34.1
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 2.8e-18 96.7 233 31.8
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 3.6e-18 96.3 237 30.4
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 3.6e-18 96.3 256 29.3
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 8.1e-18 95.1 141 46.1
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 1.1e-17 94.7 294 31.6
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.1e-17 94.7 309 28.5
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.1e-17 94.7 216 32.9
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.4e-17 94.4 259 28.6
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.4e-17 94.4 235 33.2
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 1.4e-17 94.4 259 32.4
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.8e-17 94.0 242 30.2
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.8e-17 94.0 267 30.7
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 3.1e-17 93.2 284 28.5
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 4.0e-17 92.8 266 28.9
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 5.3e-17 92.4 223 35.0
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 5.3e-17 92.4 268 30.6
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 6.9e-17 92.0 237 30.8
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 6.9e-17 92.0 267 31.1
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 9.0e-17 91.7 263 30.8
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.2e-16 91.3 211 34.1
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.2e-16 91.3 229 29.3
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.0e-16 90.5 95 50.5
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 2.0e-16 90.5 258 31.8
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 2.6e-16 90.1 223 32.7
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 2.6e-16 90.1 267 31.5
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 4.5e-16 89.4 105 45.7
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 5.8e-16 89.0 237 31.2
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 5.8e-16 89.0 227 33.0
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 9.9e-16 88.2 95 49.5
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.3e-15 87.8 256 29.7
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.7e-15 87.4 226 33.6
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.7e-15 87.4 283 29.7
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 2.2e-15 87.0 98 50.0
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 2.2e-15 87.0 261 28.7
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 2.2e-15 87.0 229 32.8
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.2e-15 87.0 241 29.5
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 4.9e-15 85.9 213 31.9
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.4e-15 85.5 205 33.7
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 8.4e-15 85.1 287 27.9
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.1e-14 84.7 207 33.3
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.1e-14 84.7 270 28.9
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.4e-14 84.3 98 50.0
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.4e-14 84.3 254 30.7
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.9e-14 84.0 104 46.2
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.4e-14 83.6 137 42.3
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.2e-14 83.2 284 29.2
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 4.2e-14 82.8 98 49.0
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 5.4e-14 82.4 208 30.3
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 7.1e-14 82.0 220 29.1
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 9.3e-14 81.6 238 30.3
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 9.3e-14 81.6 207 31.4
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.2e-13 81.3 236 28.8
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.2e-13 81.3 236 28.8
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.2e-13 81.3 262 30.5
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.6e-13 80.9 238 30.3
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 2.7e-13 80.1 287 27.2
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 2.7e-13 80.1 96 47.9
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 4.6e-13 79.3 236 28.4
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 1.3e-12 77.8 107 41.1
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.3e-12 77.8 96 45.8
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.8e-12 77.4 104 44.2
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 3.0e-12 76.6 104 45.2
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 3.9e-12 76.3 103 43.7
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.7e-12 75.1 124 40.3
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 8.7e-12 75.1 106 42.5
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.9e-11 73.9 126 41.3
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 3.3e-11 73.2 108 39.8
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 3.3e-11 73.2 273 27.8
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 2.8e-10 70.1 96 41.7
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 2.8e-10 70.1 96 41.7
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.6e-10 69.7 128 37.5
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 4.8e-10 69.3 96 41.7
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 8.1e-10 68.6 96 39.6
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 1.8e-09 67.4 95 43.2
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 5.3e-09 65.9 95 41.1
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 2.0e-08 63.9 234 32.9
Atru.chr10.202 Acer truncatum HOM05D000336 ORTHO05D002705 2.6e-08 63.5 110 34.5
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 2.6e-08 63.5 254 26.0
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 3.4e-08 63.2 105 34.3
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 5.8e-08 62.4 70 47.1
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 7.6e-08 62.0 93 39.8
unitig_32.g10850 Utricularia gibba HOM05D000336 ORTHO05D002705 7.6e-08 62.0 105 32.4
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 9.9e-08 61.6 98 35.7
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 1.7e-07 60.8 93 36.6
Manes.03G072850 Manihot esculenta HOM05D000336 ORTHO05D002705 1.7e-07 60.8 94 38.3
SGA_v2.0_scaffold67G22727 Striga asiatica HOM05D000336 ORTHO05D002705 1.7e-07 60.8 96 36.5
ECA232G1577 Erigeron canadensis HOM05D000336 ORTHO05D002705 2.9e-07 60.1 97 36.1
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 3.8e-07 59.7 98 32.7
Ciclev10015942m.g Citrus clementina HOM05D000336 ORTHO05D002705 3.8e-07 59.7 151 27.8
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 3.8e-07 59.7 92 37.0
Gohir.A12G051100 Gossypium hirsutum HOM05D000336 ORTHO05D002705 4.9e-07 59.3 107 36.4
Gohir.D12G049300 Gossypium hirsutum HOM05D000336 ORTHO05D002705 8.4e-07 58.5 107 36.4
Gorai.008G052200 Gossypium raimondii HOM05D000336 ORTHO05D002705 8.4e-07 58.5 107 36.4
Psat2g031560 Pisum sativum HOM05D000336 ORTHO05D002705 8.4e-07 58.5 93 36.6
DCAR_024281 Daucus carota HOM05D000336 ORTHO05D002705 1.1e-06 58.2 92 31.5
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 1.1e-06 58.2 100 34.0
Sabra10G0169200 Salix brachista HOM05D000336 ORTHO05D002705 1.1e-06 58.2 92 37.0
CDE02G1362 Ceratophyllum demersum HOM05D000336 ORTHO05D002705 1.4e-06 57.8 95 36.8
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.4e-06 57.8 93 38.7
arahy.Tifrunner.gnm1.ann1.DZ8KVC Arachis hypogaea HOM05D000336 ORTHO05D002705 1.9e-06 57.4 93 36.6
arahy.Tifrunner.gnm1.ann1.NJD0KH Arachis hypogaea HOM05D000336 ORTHO05D002705 1.9e-06 57.4 93 36.6
Nitab4.5_0000581g0070 Nicotiana tabacum HOM05D000336 ORTHO05D002705 1.9e-06 57.4 104 33.7
PGR044G0317 Punica granatum HOM05D000336 ORTHO05D002705 1.9e-06 57.4 92 31.5
SHI09137 Sapria himalayana HOM05D000336 ORTHO05D002705 1.9e-06 57.4 109 31.2
TWI60G1326 Tripterygium wilfordii HOM05D000336 ORTHO05D002705 1.9e-06 57.4 92 32.6
CAN.G220.42 Capsicum annuum HOM05D000336 ORTHO05D002705 2.4e-06 57.0 91 33.0
Cpa.g.sc30.64 Carica papaya HOM05D000336 ORTHO05D002705 2.4e-06 57.0 101 34.7
Duzib106G1105 Durio zibethinus HOM05D000336 ORTHO05D002705 4.2e-06 56.2 92 35.9
Lj4g0015179 Lotus japonicus HOM05D000336 ORTHO05D002705 4.2e-06 56.2 92 32.6
Actinidia35805 Actinidia chinensis HOM05D000336 ORTHO05D002705 5.5e-06 55.8 92 33.7
Manes.07G103100 Manihot esculenta HOM05D000336 ORTHO05D002705 5.5e-06 55.8 92 33.7
Thecc.02G000600 Theobroma cacao HOM05D000336 ORTHO05D002705 5.5e-06 55.8 110 32.7
A03p48810 Brassica napus HOM05D000336 ORTHO05D002705 7.1e-06 55.5 95 33.7
Hma1.2p1_2080F.1_g313465 Hydrangea macrophylla HOM05D000336 ORTHO05D002705 7.1e-06 55.5 129 31.0
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 7.1e-06 55.5 92 33.7
BcaB02g09500 Brassica carinata HOM05D000336 ORTHO05D002705 9.3e-06 55.1 93 33.3
BcaC02g11573 Brassica carinata HOM05D000336 ORTHO05D002705 9.3e-06 55.1 93 34.4
A05p10780 Brassica napus HOM05D000336 ORTHO05D002705 9.3e-06 55.1 93 34.4
C04p13890 Brassica napus HOM05D000336 ORTHO05D002705 9.3e-06 55.1 93 34.4
BolC4t22977H Brassica oleracea HOM05D000336 ORTHO05D002705 9.3e-06 55.1 93 34.4
BraA05t20022Z Brassica rapa HOM05D000336 ORTHO05D002705 9.3e-06 55.1 93 34.4
Duzib248G0328 Durio zibethinus HOM05D000336 ORTHO05D002705 9.3e-06 55.1 130 29.2
Nitab4.5_0013605g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002705 9.3e-06 55.1 92 34.8


User provided reference genes

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