Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.9e-43 178.7 88 100.0
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 6.5e-23 110.5 77 75.3
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.9e-14 82.4 77 55.8
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.6e-13 77.8 77 51.9
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.0e-12 76.6 80 52.5
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.0e-12 76.6 80 52.5
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.8e-12 73.6 80 46.2
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.8e-12 73.6 80 46.2
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 8.8e-12 73.6 80 46.2
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.8e-12 73.6 80 50.0
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.5e-11 72.8 80 48.8
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 2.0e-11 72.4 80 50.0
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.5e-11 72.0 77 48.1
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 2.5e-11 72.0 80 47.5
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.5e-11 72.0 80 46.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 2.5e-11 72.0 80 53.8
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 4.3e-11 71.2 77 50.6
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 5.7e-11 70.9 80 50.0
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 5.7e-11 70.9 80 53.8
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 5.7e-11 70.9 80 50.0
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 7.4e-11 70.5 80 47.5
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 7.4e-11 70.5 80 48.8
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 7.4e-11 70.5 80 48.8
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 7.4e-11 70.5 80 48.8
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 7.4e-11 70.5 80 48.8
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 7.4e-11 70.5 80 48.8
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 7.4e-11 70.5 78 51.3
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 7.4e-11 70.5 80 50.0
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 9.7e-11 70.1 77 50.6
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 9.7e-11 70.1 80 48.8
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 9.7e-11 70.1 80 48.8
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 9.7e-11 70.1 80 48.8
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.3e-10 69.7 80 47.5
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.3e-10 69.7 80 53.8
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.3e-10 69.7 76 51.3
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.3e-10 69.7 80 50.0
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.3e-10 69.7 80 48.8
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.7e-10 69.3 80 50.0
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.7e-10 69.3 77 50.6
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 2.2e-10 68.9 80 52.5
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 2.2e-10 68.9 80 52.5
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 2.8e-10 68.6 80 47.5
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.8e-10 68.6 80 47.5
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.8e-10 68.6 80 48.8
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 2.8e-10 68.6 80 50.0
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.8e-10 68.6 80 50.0
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 3.7e-10 68.2 80 47.5
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 3.7e-10 68.2 78 51.3
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 4.8e-10 67.8 80 48.8
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 4.8e-10 67.8 80 48.8
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.8e-10 67.8 80 51.2
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 4.8e-10 67.8 82 50.0
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 4.8e-10 67.8 83 49.4
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 6.3e-10 67.4 80 47.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 6.3e-10 67.4 80 47.5
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 6.3e-10 67.4 80 47.5
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 6.3e-10 67.4 81 46.9
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 8.2e-10 67.0 80 46.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 8.2e-10 67.0 80 51.2
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 8.2e-10 67.0 80 50.0
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 8.2e-10 67.0 79 46.8
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 8.2e-10 67.0 80 46.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.1e-09 66.6 80 47.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.1e-09 66.6 80 50.0
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-09 66.6 80 51.2
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.1e-09 66.6 80 51.2
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.1e-09 66.6 80 51.2
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.4e-09 66.2 80 48.8
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.4e-09 66.2 80 51.2
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.4e-09 66.2 77 48.1
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.8e-09 65.9 80 47.5
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.8e-09 65.9 81 48.1
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.8e-09 65.9 80 45.0
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.8e-09 65.9 77 48.1
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.4e-09 65.5 76 51.3
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.4e-09 65.5 80 50.0
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 3.1e-09 65.1 82 48.8
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.1e-09 65.1 80 47.5
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.1e-09 64.7 77 46.8
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 4.1e-09 64.7 80 50.0
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 4.1e-09 64.7 81 49.4
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 5.3e-09 64.3 80 46.2
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.3e-09 64.3 80 50.0
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 5.3e-09 64.3 80 50.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 5.3e-09 64.3 80 48.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 5.3e-09 64.3 80 48.8
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.3e-09 64.3 81 48.1
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 6.9e-09 63.9 80 47.5
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 6.9e-09 63.9 89 47.2
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 6.9e-09 63.9 76 48.7
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 9.1e-09 63.5 80 47.5
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.1e-09 63.5 79 45.6
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 9.1e-09 63.5 80 48.8
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.2e-08 63.2 80 48.8
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.2e-08 63.2 80 51.2
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.5e-08 62.8 79 48.1
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.5e-08 62.8 76 46.1
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.0e-08 62.4 79 44.3
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.0e-08 62.4 79 44.3
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 2.0e-08 62.4 80 46.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.0e-08 62.4 82 47.6
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 2.0e-08 62.4 80 46.2
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.6e-08 62.0 80 45.0
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.6e-08 62.0 80 42.5
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.6e-08 62.0 80 46.2
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 2.6e-08 62.0 81 49.4
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.4e-08 61.6 82 46.3
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 3.4e-08 61.6 80 47.5
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.4e-08 61.6 80 47.5
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.4e-08 61.6 80 47.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.5e-08 61.2 80 50.0
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.5e-08 61.2 80 48.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 5.9e-08 60.8 79 46.8
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.9e-08 60.8 78 50.0
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 5.9e-08 60.8 80 45.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.9e-08 60.8 80 46.2
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 7.7e-08 60.5 48 58.3
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-07 60.1 76 44.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-07 60.1 76 44.7
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.0e-07 60.1 80 46.2
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.3e-07 59.7 80 46.2
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.3e-07 59.7 80 46.2
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.3e-07 59.7 80 45.0
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.7e-07 59.3 81 48.1
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.7e-07 59.3 80 46.2
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.2e-07 58.9 78 44.9
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 2.2e-07 58.9 80 45.0
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.9e-07 58.5 80 45.0
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.9e-07 58.5 80 45.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.9e-07 58.5 39 66.7
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.8e-07 58.2 80 45.0
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.0e-07 57.8 80 45.0
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.1e-06 56.6 79 41.8
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-06 56.6 79 41.8
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.1e-06 56.6 77 44.2
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 3.2e-06 55.1 52 53.8
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 3.2e-06 55.1 80 42.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 3.2e-06 55.1 80 42.5
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 7.2e-06 53.9 41 58.5


User provided reference genes

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