Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003609 Vanilla planifolia HOM05D001528 ORTHO05D430132 7.2e-74 280.4 134 100.0
MD11G1131700 Malus domestica HOM05D001528 ORTHO05D002760 4.6e-12 75.1 126 40.5
Nn2g13025 Nelumbo nucifera HOM05D001528 ORTHO05D002760 3.0e-11 72.4 122 40.2
Nn2g10697 Nelumbo nucifera HOM05D001528 ORTHO05D002760 3.9e-11 72.0 122 38.5
HPP92_019465 Vanilla planifolia HOM05D001528 ORTHO05D002760 3.9e-11 72.0 118 39.0
Ca_19246_v3 Cicer arietinum L. HOM05D001528 ORTHO05D002760 6.6e-11 71.2 126 38.1
Glyma.11G154005 Glycine max HOM05D001528 ORTHO05D002760 6.6e-11 71.2 127 38.6
Sed0015595 Sechium edule HOM05D001528 ORTHO05D002760 1.1e-10 70.5 126 39.7
BcaC04g19701 Brassica carinata HOM05D001528 ORTHO05D002760 1.9e-10 69.7 124 37.1
BolC9t58178H Brassica oleracea HOM05D001528 ORTHO05D002760 1.9e-10 69.7 124 37.1
Manes.04G024600 Manihot esculenta HOM05D001528 ORTHO05D002760 1.9e-10 69.7 126 38.1
Ca_01430_v3 Cicer arietinum L. HOM05D001528 ORTHO05D002760 2.5e-10 69.3 126 38.9
Os05g0125000 Oryza sativa ssp. japonica HOM05D001528 ORTHO05D002760 2.5e-10 69.3 118 39.8
Aqoxy4G03226 Aquilegia oxysepala HOM05D001528 ORTHO05D002760 3.3e-10 68.9 117 39.3
BraA10t43843Z Brassica rapa HOM05D001528 ORTHO05D002760 3.3e-10 68.9 124 37.1
A10p17640 Brassica napus HOM05D001528 ORTHO05D002760 5.6e-10 68.2 124 36.3
TWI75G1876 Tripterygium wilfordii HOM05D001528 ORTHO05D002760 5.6e-10 68.2 136 36.8
Rhsim13G0202200 Rhododendron simsii HOM05D001528 ORTHO05D002760 7.3e-10 67.8 134 35.8
VMungo1080G0608 Vigna mungo HOM05D001528 ORTHO05D002760 7.3e-10 67.8 122 39.3
BcaB05g22639 Brassica carinata HOM05D001528 ORTHO05D002760 9.6e-10 67.4 126 40.5
Phvul.011G073200 Phaseolus vulgaris HOM05D001528 ORTHO05D002760 1.2e-09 67.0 124 37.1
TWI31G0844 Tripterygium wilfordii HOM05D001528 ORTHO05D002760 1.2e-09 67.0 126 38.1
Sed0027820 Sechium edule HOM05D001528 ORTHO05D002760 1.6e-09 66.6 126 38.9
TPR.G15537 Trifolium pratense HOM05D001528 ORTHO05D002760 1.6e-09 66.6 126 36.5
CAN.G591.1 Capsicum annuum HOM05D001528 ORTHO05D002760 2.1e-09 66.2 123 37.4
MELO3C005035.2 Cucumis melo HOM05D001528 ORTHO05D002760 2.1e-09 66.2 126 38.1
Phvul.005G137000 Phaseolus vulgaris HOM05D001528 ORTHO05D002760 2.1e-09 66.2 126 37.3
VMungo1127G0481 Vigna mungo HOM05D001528 ORTHO05D002760 2.1e-09 66.2 125 37.6
CsaV3_1G013000 Cucumis sativus L. HOM05D001528 ORTHO05D002760 2.8e-09 65.9 126 38.1
Psat7g223480 Pisum sativum HOM05D001528 ORTHO05D002760 2.8e-09 65.9 126 37.3
Prupe.6G097000 Prunus persica HOM05D001528 ORTHO05D002760 2.8e-09 65.9 96 40.6
GSVIVG01025151001 Vitis vinifera HOM05D001528 ORTHO05D002760 2.8e-09 65.9 132 38.6
BcaB08g36340 Brassica carinata HOM05D001528 ORTHO05D002760 3.6e-09 65.5 124 37.1
ClCG03G002320 Citrullus lanatus HOM05D001528 ORTHO05D002760 4.7e-09 65.1 126 38.1
MBI05_g31460_MAGBIO Magnolia biondii HOM05D001528 ORTHO05D002760 4.7e-09 65.1 73 45.2
MD03G1112700 Malus domestica HOM05D001528 ORTHO05D002760 4.7e-09 65.1 101 40.6
Manes.11G142100 Manihot esculenta HOM05D001528 ORTHO05D002760 4.7e-09 65.1 128 38.3
Atru.chr3.3682 Acer truncatum HOM05D001528 ORTHO05D002760 6.2e-09 64.7 126 35.7
arahy.Tifrunner.gnm1.ann1.3T264X Arachis hypogaea HOM05D001528 ORTHO05D002760 6.2e-09 64.7 130 36.9
TWI79G0408 Tripterygium wilfordii HOM05D001528 ORTHO05D002760 6.2e-09 64.7 126 38.9
TAR633G2599 Trochodendron aralioides HOM05D001528 ORTHO05D002760 6.2e-09 64.7 127 40.9
Hma1.2p1_0568F.1_g180120 Hydrangea macrophylla HOM05D001528 ORTHO05D002760 8.1e-09 64.3 125 37.6
arahy.Tifrunner.gnm1.ann1.A7W6G1 Arachis hypogaea HOM05D001528 ORTHO05D002760 1.1e-08 63.9 130 34.6
Glyma.12G071300 Glycine max HOM05D001528 ORTHO05D002760 1.1e-08 63.9 92 39.1
Medtr4g060510 Medicago truncatula HOM05D001528 ORTHO05D002760 1.1e-08 63.9 101 38.6
Lalb_Chr22g0350201 Lupinus albus HOM05D001528 ORTHO05D002760 1.4e-08 63.5 126 36.5
vmacro04097 Vaccinium macrocarpon HOM05D001528 ORTHO05D002760 1.8e-08 63.2 125 37.6
C09p53040 Brassica napus HOM05D001528 ORTHO05D002760 2.4e-08 62.8 94 37.2
CSS0044348 Camellia sinensis var. sinensis HOM05D001528 ORTHO05D002760 2.4e-08 62.8 123 35.8
Thhalv10002397m.g Eutrema salsugineum HOM05D001528 ORTHO05D002760 2.4e-08 62.8 122 34.4
Potri.009G015000 Populus trichocarpa HOM05D001528 ORTHO05D002760 3.1e-08 62.4 128 36.7
Lj1C186T6 Lonicera japonica HOM05D001528 ORTHO05D002760 4.0e-08 62.0 54 55.6
Aa31LG1G12460 Aethionema arabicum HOM05D001528 ORTHO05D002760 5.2e-08 61.6 125 36.0
Thhalv10012623m.g Eutrema salsugineum HOM05D001528 ORTHO05D002760 5.2e-08 61.6 125 37.6
AL8G37030 Arabidopsis lyrata HOM05D001528 ORTHO05D002760 6.8e-08 61.2 125 36.8
Lj3g0004090 Lotus japonicus HOM05D001528 ORTHO05D002760 6.8e-08 61.2 127 37.8
Lalb_Chr24g0394471 Lupinus albus HOM05D001528 ORTHO05D002760 6.8e-08 61.2 126 36.5
Potri.004G210200 Populus trichocarpa HOM05D001528 ORTHO05D002760 6.8e-08 61.2 125 35.2
AT5G60410 Arabidopsis thaliana HOM05D001528 ORTHO05D002760 8.9e-08 60.8 125 36.8
C02p11710 Brassica napus HOM05D001528 ORTHO05D002760 8.9e-08 60.8 128 37.5
BraA02t05729Z Brassica rapa HOM05D001528 ORTHO05D002760 8.9e-08 60.8 128 37.5
DCAR_015556 Daucus carota HOM05D001528 ORTHO05D002760 8.9e-08 60.8 50 58.0
Glyma.13G328100 Glycine max HOM05D001528 ORTHO05D002760 8.9e-08 60.8 126 37.3
Hma1.2p1_0071F.1_g038120 Hydrangea macrophylla HOM05D001528 ORTHO05D002760 8.9e-08 60.8 125 37.6
Lalb_Chr03g0027171 Lupinus albus HOM05D001528 ORTHO05D002760 8.9e-08 60.8 55 52.7
Medtr2g093730 Medicago truncatula HOM05D001528 ORTHO05D002760 8.9e-08 60.8 116 35.3
BcaC03g13975 Brassica carinata HOM05D001528 ORTHO05D002760 1.2e-07 60.5 124 38.7
BolC2t07268H Brassica oleracea HOM05D001528 ORTHO05D002760 1.2e-07 60.5 124 38.7
Cpa.g.sc139.76 Carica papaya HOM05D001528 ORTHO05D002760 1.2e-07 60.5 136 33.1
ECA233G3194 Erigeron canadensis HOM05D001528 ORTHO05D002760 1.2e-07 60.5 130 32.3
RcHm_v2.0_Chr5g0060321 Rosa chinensis HOM05D001528 ORTHO05D002760 1.2e-07 60.5 126 33.3
Sp6g22000 Schrenkiella parvula HOM05D001528 ORTHO05D002760 1.2e-07 60.5 125 36.8
Nitab4.5_0001830g0030 Nicotiana tabacum HOM05D001528 ORTHO05D002760 1.5e-07 60.1 65 47.7
Peaxi162Scf00351g00327 Petunia axillaris HOM05D001528 ORTHO05D002760 1.5e-07 60.1 59 49.2
TAR636G1502 Trochodendron aralioides HOM05D001528 ORTHO05D002760 1.5e-07 60.1 123 35.8
BcaC01g01974 Brassica carinata HOM05D001528 ORTHO05D002760 2.0e-07 59.7 122 34.4
C03p69900 Brassica napus HOM05D001528 ORTHO05D002760 2.0e-07 59.7 122 34.4
BolC3t19251H Brassica oleracea HOM05D001528 ORTHO05D002760 2.0e-07 59.7 122 34.4
Glyma.12G170900 Glycine max HOM05D001528 ORTHO05D002760 2.0e-07 59.7 126 35.7
CARHR150570 Cardamine hirsuta HOM05D001528 ORTHO05D002760 2.6e-07 59.3 123 33.3
CiPaw.13G108200 Carya illinoinensis HOM05D001528 ORTHO05D002760 2.6e-07 59.3 122 36.9
Lalb_Chr19g0137371 Lupinus albus HOM05D001528 ORTHO05D002760 2.6e-07 59.3 122 35.2
Nitab4.5_0000999g0090 Nicotiana tabacum HOM05D001528 ORTHO05D002760 2.6e-07 59.3 59 49.2
PSO339G4033 Papaver somniferum HOM05D001528 ORTHO05D002760 2.6e-07 59.3 130 33.8
PSO384G1932 Papaver somniferum HOM05D001528 ORTHO05D002760 3.4e-07 58.9 54 51.9
Psat5g277360 Pisum sativum HOM05D001528 ORTHO05D002760 3.4e-07 58.9 101 36.6
Solyc11g069160.3 Solanum lycopersicum HOM05D001528 ORTHO05D002760 3.4e-07 58.9 120 32.5
TPR.G27029 Trifolium pratense HOM05D001528 ORTHO05D002760 3.4e-07 58.9 55 52.7
CSS0002841 Camellia sinensis var. sinensis HOM05D001528 ORTHO05D002760 4.4e-07 58.5 120 32.5
Sc15g0002250 Simmondsia chinensis HOM05D001528 ORTHO05D002760 4.4e-07 58.5 120 33.3
PGSC0003DMG400008114 Solanum tuberosum HOM05D001528 ORTHO05D002760 4.4e-07 58.5 59 47.5
Carub.0008s2112 Capsella rubella HOM05D001528 ORTHO05D002760 5.8e-07 58.2 125 37.6
CiPaw.13G108100 Carya illinoinensis HOM05D001528 ORTHO05D002760 5.8e-07 58.2 122 36.1
ECA248G0966 Erigeron canadensis HOM05D001528 ORTHO05D002760 5.8e-07 58.2 94 39.4
Lj3g0008308 Lotus japonicus HOM05D001528 ORTHO05D002760 5.8e-07 58.2 55 50.9
Nitab4.5_0001275g0030 Nicotiana tabacum HOM05D001528 ORTHO05D002760 5.8e-07 58.2 65 44.6
ATR0314G036 Amborella trichopoda HOM05D001528 ORTHO05D002760 7.6e-07 57.8 122 32.8
A06p21480 Brassica napus HOM05D001528 ORTHO05D002760 7.6e-07 57.8 122 34.4
Ciclev10030028m.g Citrus clementina HOM05D001528 ORTHO05D002760 7.6e-07 57.8 102 37.3
FvH4_3g32990 Fragaria vesca HOM05D001528 ORTHO05D002760 7.6e-07 57.8 59 45.8
FAN11G2701 Fragaria x ananassa HOM05D001528 ORTHO05D002760 7.6e-07 57.8 59 45.8
FAN16G3551 Fragaria x ananassa HOM05D001528 ORTHO05D002760 7.6e-07 57.8 59 45.8
QL01p023251 Quercus lobata HOM05D001528 ORTHO05D002760 7.6e-07 57.8 75 40.0
Sopen11g027900 Solanum pennellii HOM05D001528 ORTHO05D002760 7.6e-07 57.8 59 47.5
Cc01_g11440 Coffea canephora HOM05D001528 ORTHO05D002760 9.9e-07 57.4 54 50.0
FAN21G1847 Fragaria x ananassa HOM05D001528 ORTHO05D002760 9.9e-07 57.4 54 48.1
Sabra09G0009500 Salix brachista HOM05D001528 ORTHO05D002760 9.9e-07 57.4 129 34.1
BraA06t25231Z Brassica rapa HOM05D001528 ORTHO05D002760 1.3e-06 57.0 122 33.6
Haze_23898 Corylus avellana HOM05D001528 ORTHO05D002760 1.7e-06 56.6 133 33.8
Dinv32778 Davidia involucrata HOM05D001528 ORTHO05D002760 1.7e-06 56.6 60 48.3
FAN25G2987 Fragaria x ananassa HOM05D001528 ORTHO05D002760 1.7e-06 56.6 59 45.8
Nitab4.5_0002186g0050 Nicotiana tabacum HOM05D001528 ORTHO05D002760 2.2e-06 56.2 59 47.5
Dinv06399 Davidia involucrata HOM05D001528 ORTHO05D002760 2.9e-06 55.8 93 39.8
Oeu002457.1 Olea europaea HOM05D001528 ORTHO05D002760 2.9e-06 55.8 121 34.7
PGR119G1340 Punica granatum HOM05D001528 ORTHO05D002760 2.9e-06 55.8 75 44.0
THA.LOC104810846 Tarenaya hassleriana HOM05D001528 ORTHO05D002760 2.9e-06 55.8 52 51.9
unitig_747.g22006 Utricularia gibba HOM05D001528 ORTHO05D002760 2.9e-06 55.8 123 34.1
AL5G23910 Arabidopsis lyrata HOM05D001528 ORTHO05D002760 3.8e-06 55.5 123 33.3
Zm00001eb355110 Zea mays HOM05D001528 ORTHO05D002760 3.8e-06 55.5 61 50.8
Carub.0005s1118 Capsella rubella HOM05D001528 ORTHO05D002760 4.9e-06 55.1 123 34.1
COL.COLO4_05188 Corchorus olitorius HOM05D001528 ORTHO05D002760 4.9e-06 55.1 89 39.3
Hund08381 Selenicereus undatus HOM05D001528 ORTHO05D002760 4.9e-06 55.1 53 52.8
TAR369G0129 Trochodendron aralioides HOM05D001528 ORTHO05D002760 4.9e-06 55.1 54 51.9
Rhsim01G0195800 Rhododendron simsii HOM05D001528 ORTHO05D002760 6.4e-06 54.7 54 51.9
vmacro14283 Vaccinium macrocarpon HOM05D001528 ORTHO05D002760 6.4e-06 54.7 54 51.9
MSTRG.12325 Avicennia marina HOM05D001528 ORTHO05D002760 8.4e-06 54.3 122 32.8
HanXRQChr10g0291121 Helianthus annuus HOM05D001528 ORTHO05D002760 8.4e-06 54.3 126 34.1
THA.LOC104814835 Tarenaya hassleriana HOM05D001528 ORTHO05D002760 8.4e-06 54.3 127 31.5


User provided reference genes

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