Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003585 Vanilla planifolia HOM05D002739 ORTHO05D002877 4.0e-69 264.6 132 100.0
QL04p013260 Quercus lobata HOM05D002739 ORTHO05D002877 1.1e-15 87.0 87 44.8
QL04p013227 Quercus lobata HOM05D002739 ORTHO05D002877 2.0e-15 86.3 86 46.5
QL04p013297 Quercus lobata HOM05D002739 ORTHO05D002877 2.6e-15 85.9 110 39.1
QL04p013222 Quercus lobata HOM05D002739 ORTHO05D002877 3.3e-15 85.5 86 46.5
QL04p013244 Quercus lobata HOM05D002739 ORTHO05D002877 7.4e-15 84.3 86 48.8
Cpa.g.sc84.10 Carica papaya HOM05D002739 ORTHO05D002877 2.8e-14 82.4 84 51.2
Ciclev10017226m.g Citrus clementina HOM05D002739 ORTHO05D002877 2.8e-14 82.4 86 47.7
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 3.7e-14 82.0 88 46.6
Manes.14G006100 Manihot esculenta HOM05D002739 ORTHO05D002877 4.8e-14 81.6 78 48.7
Cfa009830 Carpinus fangiana HOM05D002739 ORTHO05D002877 6.3e-14 81.3 85 48.2
QL04p013238 Quercus lobata HOM05D002739 ORTHO05D002877 6.3e-14 81.3 85 44.7
THA.LOC104826487 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 6.3e-14 81.3 83 44.6
Ciclev10017233m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.1e-13 80.5 86 47.7
Sabra01G0017600 Salix brachista HOM05D002739 ORTHO05D002877 1.1e-13 80.5 115 36.5
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 1.4e-13 80.1 90 41.1
THA.LOC104826714 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.4e-13 80.1 82 47.6
Ca_11246_v3 Cicer arietinum L. HOM05D002739 ORTHO05D002877 1.8e-13 79.7 87 43.7
Glyma.12G022000 Glycine max HOM05D002739 ORTHO05D002877 1.8e-13 79.7 87 48.3
CiPaw.13G010100 Carya illinoinensis HOM05D002739 ORTHO05D002877 2.4e-13 79.3 83 43.4
BcaB03g12793 Brassica carinata HOM05D002739 ORTHO05D002877 3.1e-13 79.0 84 44.0
Aa31sc407G10 Aethionema arabicum HOM05D002739 ORTHO05D002877 4.1e-13 78.6 87 39.1
CARHR238780 Cardamine hirsuta HOM05D002739 ORTHO05D002877 4.1e-13 78.6 82 46.3
Ciclev10017446m.g Citrus clementina HOM05D002739 ORTHO05D002877 4.1e-13 78.6 119 38.7
Thhalv10026851m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 4.1e-13 78.6 82 47.6
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 4.1e-13 78.6 86 41.9
Potri.001G023300 Populus trichocarpa HOM05D002739 ORTHO05D002877 5.3e-13 78.2 115 37.4
Haze_23193 Corylus avellana HOM05D002739 ORTHO05D002877 7.0e-13 77.8 86 44.2
Carub.0007s0967 Capsella rubella HOM05D002739 ORTHO05D002877 9.1e-13 77.4 82 46.3
Haze_03109 Corylus avellana HOM05D002215 ORTHO05D002238 9.1e-13 77.4 105 38.1
Thhalv10026604m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 9.1e-13 77.4 96 40.6
Medtr4g077180 Medicago truncatula HOM05D002739 ORTHO05D002877 9.1e-13 77.4 86 43.0
AL7G17970 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 1.2e-12 77.0 88 40.9
AL7G21220 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 1.2e-12 77.0 82 45.1
CSS0000269 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.2e-12 77.0 86 43.0
CSS0014844 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.2e-12 77.0 86 43.0
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.2e-12 77.0 86 43.0
CSS0048223 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 1.2e-12 77.0 86 43.0
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 1.2e-12 77.0 83 45.8
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 1.2e-12 77.0 86 47.7
Sp7g28750 Schrenkiella parvula HOM05D002739 ORTHO05D002877 1.2e-12 77.0 82 46.3
AT4G33550 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 1.6e-12 76.6 84 42.9
CARHR241650 Cardamine hirsuta HOM05D002739 ORTHO05D002877 1.6e-12 76.6 84 42.9
Potri.001G023200 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.6e-12 76.6 85 41.2
Sp7g31290 Schrenkiella parvula HOM05D002739 ORTHO05D002877 1.6e-12 76.6 84 42.9
BcaC01g00985 Brassica carinata HOM05D002739 ORTHO05D002877 2.0e-12 76.3 84 42.9
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.0e-12 76.3 82 46.3
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 2.0e-12 76.3 77 48.1
BcaB03g12794 Brassica carinata HOM05D002739 ORTHO05D002877 3.5e-12 75.5 84 40.5
BcaC01g01134 Brassica carinata HOM05D002739 ORTHO05D002877 3.5e-12 75.5 83 45.8
BolC3t21155H Brassica oleracea HOM05D002739 ORTHO05D002877 3.5e-12 75.5 83 45.8
Glyma.11G095900 Glycine max HOM05D002739 ORTHO05D002877 3.5e-12 75.5 87 43.7
BcaB03g12664 Brassica carinata HOM05D002739 ORTHO05D002877 4.5e-12 75.1 85 43.5
C03p88470 Brassica napus HOM05D002739 ORTHO05D002877 4.5e-12 75.1 83 45.8
Ciclev10018012m.g Citrus clementina HOM05D002739 ORTHO05D002877 4.5e-12 75.1 112 40.2
MBI13_g04764_MAGBIO Magnolia biondii HOM05D002739 ORTHO05D002877 4.5e-12 75.1 104 40.4
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 4.5e-12 75.1 82 46.3
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 4.5e-12 75.1 82 46.3
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 4.5e-12 75.1 82 46.3
PSO339G3199 Papaver somniferum HOM05D002739 ORTHO05D002877 4.5e-12 75.1 111 39.6
THA.LOC104800444 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 4.5e-12 75.1 82 48.8
TWI38G1066 Tripterygium wilfordii HOM05D002739 ORTHO05D002877 4.5e-12 75.1 85 41.2
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 4.5e-12 75.1 82 42.7
Ciclev10017249m.g Citrus clementina HOM05D002739 ORTHO05D002877 5.9e-12 74.7 113 38.9
BcaC09g51875 Brassica carinata HOM05D002739 ORTHO05D002877 7.7e-12 74.3 99 39.4
PSO339G1495 Papaver somniferum HOM05D002739 ORTHO05D002877 7.7e-12 74.3 92 39.1
FAN10G1712 Fragaria x ananassa HOM05D002739 ORTHO05D002877 1.0e-11 73.9 83 44.6
PSO384G1869 Papaver somniferum HOM05D002739 ORTHO05D002877 1.0e-11 73.9 92 44.6
Phvul.011G024000 Phaseolus vulgaris HOM05D002739 ORTHO05D002877 1.0e-11 73.9 87 42.5
Psat2g010760 Pisum sativum HOM05D002739 ORTHO05D002877 1.0e-11 73.9 82 42.7
TPR.G22564 Trifolium pratense HOM05D002739 ORTHO05D002877 1.0e-11 73.9 122 36.1
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.3e-11 73.6 89 41.6
Glyma.04G138700 Glycine max HOM05D002739 ORTHO05D002877 1.3e-11 73.6 81 42.0
THA.LOC104819118 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 1.3e-11 73.6 82 43.9
FvH4_7g02210 Fragaria vesca HOM05D002739 ORTHO05D002877 1.7e-11 73.2 83 43.4
VMungo1127G0532 Vigna mungo HOM05D002739 ORTHO05D002877 1.7e-11 73.2 82 46.3
A01p07300 Brassica napus HOM05D002739 ORTHO05D002877 2.2e-11 72.8 98 39.8
BraA01t00679Z Brassica rapa HOM05D002739 ORTHO05D002877 2.2e-11 72.8 98 39.8
Medtr4g076150 Medicago truncatula HOM05D002739 ORTHO05D002877 2.2e-11 72.8 86 38.4
C01p08060 Brassica napus HOM05D002739 ORTHO05D002877 2.9e-11 72.4 98 39.8
Ciclev10017652m.g Citrus clementina HOM05D002739 ORTHO05D002877 2.9e-11 72.4 115 34.8
BcaNung03432 Brassica carinata HOM05D002739 ORTHO05D002877 5.0e-11 71.6 81 43.2
Manes.04G135500 Manihot esculenta HOM05D002739 ORTHO05D002877 5.0e-11 71.6 82 40.2
QL04p013280 Quercus lobata HOM05D002739 ORTHO05D002877 5.0e-11 71.6 110 37.3
Aa31LG2G19500 Aethionema arabicum HOM05D002739 ORTHO05D002877 6.5e-11 71.2 80 43.8
Aqoxy2G00281 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 6.5e-11 71.2 89 39.3
HanXRQChr01g0020811 Helianthus annuus HOM05D002739 ORTHO05D002877 8.5e-11 70.9 81 39.5
HanXRQChr14g0441021 Helianthus annuus HOM05D002739 ORTHO05D002877 8.5e-11 70.9 85 41.2
PSO384G0435 Papaver somniferum HOM05D002739 ORTHO05D002877 8.5e-11 70.9 92 39.1
Thecc.09G243000 Theobroma cacao HOM05D002739 ORTHO05D002877 8.5e-11 70.9 82 43.9
PSO384G1879 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-10 70.5 86 39.5
GSVIVG01000854001 Vitis vinifera HOM05D002739 ORTHO05D002877 1.1e-10 70.5 90 41.1
ATR0721G099 Amborella trichopoda HOM05D002739 ORTHO05D002877 1.5e-10 70.1 90 40.0
BolC1t00795H Brassica oleracea HOM05D002739 ORTHO05D002877 1.5e-10 70.1 95 38.9
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 1.5e-10 70.1 112 35.7
Nn2g15046 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.5e-10 70.1 76 48.7
TPR.G35362 Trifolium pratense HOM05D002739 ORTHO05D002877 1.9e-10 69.7 84 41.7
TPR.G35352 Trifolium pratense HOM05D002739 ORTHO05D002877 2.5e-10 69.3 88 35.2
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 3.2e-10 68.9 81 42.0
Medtr5g093820 Medicago truncatula HOM05D002739 ORTHO05D002877 3.2e-10 68.9 81 38.3
CANSAT80G1481 Cannabis sativa HOM05D002739 ORTHO05D002877 4.2e-10 68.6 80 41.2
ATR0721G102 Amborella trichopoda HOM05D002739 ORTHO05D002877 5.5e-10 68.2 84 44.0
Carub.0007s0690 Capsella rubella HOM05D002739 ORTHO05D002877 5.5e-10 68.2 81 42.0
Gohir.A07G121800 Gossypium hirsutum HOM05D002739 ORTHO05D002877 5.5e-10 68.2 84 39.3
Gohir.D07G126100 Gossypium hirsutum HOM05D002739 ORTHO05D002877 5.5e-10 68.2 84 39.3
Manes.14G006000 Manihot esculenta HOM05D002739 ORTHO05D002877 5.5e-10 68.2 75 45.3
PSO384G3631 Papaver somniferum HOM05D002739 ORTHO05D002877 5.5e-10 68.2 115 38.3
Lalb_Chr04g0263901 Lupinus albus HOM05D002739 ORTHO05D002877 7.2e-10 67.8 80 40.0
Os01g0800600 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 7.2e-10 67.8 89 38.2
Nn7g36443 Nelumbo nucifera HOM05D002739 ORTHO05D002877 9.4e-10 67.4 82 41.5
Nn7g38449 Nelumbo nucifera HOM05D002739 ORTHO05D002877 9.4e-10 67.4 82 41.5
TAR623G1716 Trochodendron aralioides HOM05D002739 ORTHO05D002877 9.4e-10 67.4 79 43.0
Lj3g0006865 Lotus japonicus HOM05D002739 ORTHO05D002877 1.2e-09 67.0 122 33.6
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 1.2e-09 67.0 110 33.6
BcaC01g00986 Brassica carinata HOM05D002739 ORTHO05D002877 1.6e-09 66.6 78 41.0
Nn7g36467 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.6e-09 66.6 78 39.7
PSO349G0104 Papaver somniferum HOM05D002739 ORTHO05D002877 1.6e-09 66.6 112 34.8
Potri.009G049300 Populus trichocarpa HOM05D002739 ORTHO05D002877 2.1e-09 66.2 117 35.0
Duzib168G0958 Durio zibethinus HOM05D002739 ORTHO05D002877 3.6e-09 65.5 100 35.0
Zm00001eb369440 Zea mays HOM05D002739 ORTHO05D002877 3.6e-09 65.5 112 32.1
Actinidia16366 Actinidia chinensis HOM05D002739 ORTHO05D002877 6.1e-09 64.7 75 41.3
PSO339G0568 Papaver somniferum HOM05D002739 ORTHO05D002877 6.1e-09 64.7 84 36.9
COL.COLO4_36502 Corchorus olitorius HOM05D002739 ORTHO05D002877 8.0e-09 64.3 75 45.3
Gorai.001G136100 Gossypium raimondii HOM05D002739 ORTHO05D002877 8.0e-09 64.3 89 38.2
MD02G1296400 Malus domestica HOM05D002739 ORTHO05D002877 8.0e-09 64.3 91 37.4
VMungo1080G0496 Vigna mungo HOM05D002739 ORTHO05D002877 8.0e-09 64.3 71 43.7
PGR031G3191 Punica granatum HOM05D002739 ORTHO05D002877 1.0e-08 63.9 82 42.7
Sabra01G0017500 Salix brachista HOM05D002739 ORTHO05D002877 1.0e-08 63.9 82 36.6
Ciclev10017598m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.4e-08 63.5 87 42.5
GSVIVG01000855001 Vitis vinifera HOM05D002739 ORTHO05D002877 1.4e-08 63.5 68 47.1
Lj1g0024813 Lotus japonicus HOM05D002739 ORTHO05D002877 1.8e-08 63.2 84 32.1
Os03g0369100 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 1.8e-08 63.2 90 37.8
CiPaw.13G153200 Carya illinoinensis HOM05D002739 ORTHO05D002877 3.0e-08 62.4 86 37.2
TPR.G35351 Trifolium pratense HOM05D002739 ORTHO05D002877 3.0e-08 62.4 81 38.3
COL.COLO4_04118 Corchorus olitorius HOM05D002739 ORTHO05D002877 5.2e-08 61.6 72 45.8
Phvul.005G033100 Phaseolus vulgaris HOM05D002739 ORTHO05D002877 5.2e-08 61.6 79 40.5
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.2e-08 61.6 70 38.6
SHI27456 Sapria himalayana HOM05D000002 ORTHO05D000001 6.7e-08 61.2 72 38.9
PSO349G0264 Papaver somniferum HOM05D002739 ORTHO05D002877 8.8e-08 60.8 68 42.6
PSO765G0023 Papaver somniferum HOM05D002739 ORTHO05D002877 8.8e-08 60.8 72 41.7
Cpa.g.sc84.11 Carica papaya HOM05D002739 ORTHO05D002877 1.2e-07 60.5 88 36.4
PSO349G0133 Papaver somniferum HOM05D002739 ORTHO05D002877 1.2e-07 60.5 120 33.3
AT5G56480 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 1.5e-07 60.1 85 32.9
AT1G32280 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 2.0e-07 59.7 89 32.6
PSO349G0096 Papaver somniferum HOM05D002739 ORTHO05D002877 2.6e-07 59.3 123 33.3
Phvul.008G271700 Phaseolus vulgaris HOM05D002739 ORTHO05D050259 4.4e-07 58.5 94 33.0
QL01p026935 Quercus lobata HOM05D002739 ORTHO05D002877 4.4e-07 58.5 107 33.6
Psat1g130000 Pisum sativum HOM05D002739 ORTHO05D002877 5.7e-07 58.2 86 36.0
Prupe.4G257900 Prunus persica HOM05D002739 ORTHO05D002877 5.7e-07 58.2 61 49.2
QL01p026933 Quercus lobata HOM05D002739 ORTHO05D002877 5.7e-07 58.2 87 36.8
Carub.0001s3061 Capsella rubella HOM05D002739 ORTHO05D002877 7.5e-07 57.8 89 30.3
CARHR270120 Cardamine hirsuta HOM05D002739 ORTHO05D002877 7.5e-07 57.8 85 36.5
Haze_18708 Corylus avellana HOM05D002739 ORTHO05D002877 7.5e-07 57.8 116 31.0
AL8G32240 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 9.7e-07 57.4 85 31.8
CiPaw.13G010000 Carya illinoinensis HOM05D002739 ORTHO05D002877 9.7e-07 57.4 66 39.4
Os11g0484700 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 9.7e-07 57.4 80 37.5
AL1G46440 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 2.8e-06 55.8 77 33.8
A10p13840 Brassica napus HOM05D002739 ORTHO05D002877 2.8e-06 55.8 85 31.8
BraA10t43477Z Brassica rapa HOM05D002739 ORTHO05D002877 2.8e-06 55.8 85 31.8
TPR.G40003 Trifolium pratense HOM05D002739 ORTHO05D002877 2.8e-06 55.8 46 50.0


User provided reference genes

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