Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 9.6e-129 463.8 280 100.0
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 9.8e-65 251.1 211 65.9
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.7e-61 240.4 276 55.8
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.5e-60 236.5 267 52.1
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.2e-59 234.2 189 61.9
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.6e-59 233.8 235 54.9
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 6.1e-59 231.9 212 55.7
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 8.0e-59 231.5 258 49.2
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 1.4e-58 230.7 203 61.6
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.3e-58 229.9 216 65.3
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 2.3e-58 229.9 226 58.0
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 4.0e-58 229.2 211 66.8
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 6.8e-58 228.4 247 49.8
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.5e-57 227.3 251 50.2
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.5e-57 227.3 266 48.5
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.0e-57 226.9 251 50.2
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.0e-57 226.9 237 51.5
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.0e-57 226.9 259 51.0
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.0e-57 226.9 256 62.5
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.0e-57 226.9 203 64.5
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.6e-57 226.5 241 56.0
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 3.4e-57 226.1 266 48.5
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 4.4e-57 225.7 265 51.3
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 5.7e-57 225.3 244 51.2
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.5e-57 224.9 229 64.2
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 9.8e-57 224.6 229 65.9
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 8.3e-56 221.5 245 60.8
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.8e-55 220.3 203 55.7
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.8e-55 220.3 228 51.8
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 2.4e-55 219.9 237 60.8
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.4e-55 219.9 202 67.3
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 4.1e-55 219.2 270 49.3
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.1e-55 219.2 238 50.4
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 5.4e-55 218.8 253 58.9
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 5.4e-55 218.8 266 50.4
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.6e-54 217.2 240 55.8
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 2.0e-54 216.9 245 53.1
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.7e-54 216.5 233 49.4
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.5e-54 216.1 250 59.2
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 3.5e-54 216.1 227 56.8
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 4.5e-54 215.7 250 47.6
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.5e-54 215.7 242 50.0
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 5.9e-54 215.3 250 51.2
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.7e-53 213.8 271 46.5
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.3e-53 213.4 267 46.1
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 2.3e-53 213.4 203 51.7
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.9e-53 213.0 203 68.0
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.8e-53 212.6 246 48.4
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 3.8e-53 212.6 209 60.3
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 6.6e-53 211.8 202 59.4
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 6.6e-53 211.8 232 51.7
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 8.6e-53 211.5 202 61.9
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.9e-52 210.3 202 61.4
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.9e-52 210.3 211 52.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.9e-52 210.3 211 52.6
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 2.5e-52 209.9 206 51.9
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 4.2e-52 209.1 272 46.0
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 5.5e-52 208.8 213 56.3
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 5.5e-52 208.8 251 55.4
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 7.2e-52 208.4 212 51.9
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 7.2e-52 208.4 235 51.9
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 9.5e-52 208.0 213 49.8
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-51 207.6 202 52.0
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.6e-51 207.2 231 46.3
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.8e-51 206.5 197 67.0
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.8e-51 206.5 197 67.0
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 8.0e-51 204.9 233 53.6
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 8.0e-51 204.9 205 61.5
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.0e-50 204.5 238 50.0
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.8e-50 203.8 230 50.4
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 2.3e-50 203.4 202 53.5
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.2e-50 202.2 216 50.9
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.5e-49 200.7 180 71.1
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.5e-49 200.7 196 54.6
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 3.4e-49 199.5 226 59.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.4e-49 199.5 226 59.7
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 9.8e-49 198.0 222 54.5
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 2.2e-48 196.8 224 59.4
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.9e-48 196.4 192 52.6
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 2.9e-48 196.4 202 57.9
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 3.7e-48 196.1 224 59.4
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 3.7e-48 196.1 199 54.3
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 4.9e-48 195.7 182 69.8
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 6.3e-48 195.3 224 58.9
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 6.3e-48 195.3 218 49.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.1e-47 194.5 270 51.9
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.4e-47 194.1 224 49.6
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.4e-47 193.4 210 55.7
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.4e-47 193.4 216 49.5
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 3.2e-47 193.0 218 48.2
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.2e-47 191.4 253 51.4
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.2e-46 191.0 243 54.3
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.0e-46 190.3 253 53.0
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.7e-46 189.9 257 51.0
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 2.7e-46 189.9 200 60.0
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.6e-46 189.1 180 68.9
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 2.9e-45 186.4 225 57.8
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 2.9e-45 186.4 209 59.8
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.9e-45 186.4 196 48.0
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 3.9e-45 186.0 232 48.3
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.9e-45 186.0 247 54.7
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 5.0e-45 185.7 194 50.0
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 3.3e-44 183.0 211 58.8
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 4.3e-44 182.6 261 45.2
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 5.6e-44 182.2 238 55.0
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 7.3e-44 181.8 255 45.9
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 9.5e-44 181.4 265 57.0
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 9.5e-44 181.4 265 57.0
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.6e-43 180.6 206 60.7
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.6e-43 180.6 206 60.7
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.6e-43 180.6 206 60.7
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.6e-43 180.6 206 60.7
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.1e-43 180.3 233 56.2
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 4.7e-43 179.1 231 44.2
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 6.1e-43 178.7 264 56.8
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.8e-42 177.2 181 60.8
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 2.3e-42 176.8 240 44.6
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.0e-42 176.0 247 53.4
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 4.0e-42 176.0 247 53.4
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 6.8e-42 175.3 165 63.6
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.5e-41 174.1 206 46.6
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.4e-41 172.9 206 46.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 5.8e-41 172.2 187 45.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.9e-40 169.9 228 47.4
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 7.0e-39 165.2 207 54.1
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 9.2e-39 164.9 188 47.9
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.3e-37 160.2 201 46.8
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 3.9e-37 159.5 215 58.6
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 8.6e-37 158.3 187 42.2
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.9e-36 157.1 165 49.7
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 4.3e-36 156.0 174 64.9
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 5.6e-36 155.6 196 46.9
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.6e-35 154.1 179 56.4
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.1e-35 153.7 198 54.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.1e-35 153.7 198 54.0
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 6.2e-35 152.1 145 52.4
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 2.3e-34 150.2 191 41.9
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 8.9e-34 148.3 224 41.1
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.5e-33 147.5 195 40.0
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 9.8e-33 144.8 195 46.2
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 6.4e-32 142.1 216 37.5
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.4e-31 141.0 221 57.9
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.9e-31 140.6 212 42.5
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 3.2e-31 139.8 204 41.7
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 7.1e-31 138.7 228 40.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 9.2e-31 138.3 204 40.7
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.1e-30 137.1 204 40.2
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.0e-29 134.8 196 40.8
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.5e-28 131.0 207 37.7
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.2e-27 127.9 122 54.9
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.7e-27 125.9 256 35.2
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.4e-26 124.4 213 35.2
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.4e-26 124.4 191 40.3
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.4e-25 119.4 155 41.3
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.2e-23 113.2 130 53.8
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 3.5e-22 109.8 227 34.4
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 7.3e-20 102.1 83 62.7
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 2.1e-19 100.5 165 38.2
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 6.2e-19 99.0 189 37.6
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.1e-18 96.7 167 35.3
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 3.3e-12 76.6 62 54.8
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.1e-11 73.9 65 55.4
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 3.6e-11 73.2 62 59.7
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 1.4e-10 71.2 91 41.8
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 3.1e-10 70.1 59 52.5
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 5.4e-07 59.3 33 75.8
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 7.1e-07 58.9 206 20.9
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 9.3e-07 58.5 159 26.4


User provided reference genes

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