Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.7e-129 464.9 240 100.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 2.9e-102 375.6 235 75.3
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 3.8e-102 375.2 238 74.8
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 8.5e-102 374.0 238 74.8
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.1e-101 373.6 235 74.9
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 3.2e-101 372.1 235 75.3
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 3.6e-100 368.6 238 73.9
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.7e-100 368.2 238 74.4
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.8e-99 366.3 235 74.9
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.0e-98 362.8 236 73.3
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.0e-98 362.8 236 73.3
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 2.6e-98 362.5 235 73.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.6e-98 362.5 236 73.3
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 9.8e-98 360.5 236 72.9
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 8.3e-97 357.5 233 73.8
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.1e-96 357.1 238 71.0
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.4e-96 356.7 236 71.2
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.4e-96 356.7 236 72.5
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 3.1e-96 355.5 233 72.1
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.4e-96 354.8 236 70.3
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 7.0e-96 354.4 235 72.8
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 7.0e-96 354.4 236 72.0
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 9.2e-96 354.0 236 70.8
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.2e-95 353.6 236 72.5
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.0e-95 352.8 188 99.5
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.5e-95 352.1 236 72.0
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.5e-95 351.7 235 72.3
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 71.9
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 5.9e-95 351.3 235 71.5
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.0e-94 350.5 236 72.5
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.3e-94 349.4 236 70.3
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 6.6e-94 347.8 225 73.3
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 6.6e-94 347.8 231 74.0
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 7.3e-93 344.4 236 68.2
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.2e-92 343.6 236 68.6
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.2e-92 343.6 236 69.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.6e-92 343.2 236 71.2
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.1e-92 342.8 236 68.2
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 2.1e-92 342.8 236 70.8
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.4e-91 340.1 227 70.5
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.3e-91 339.3 235 69.4
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 1.5e-90 336.7 237 67.1
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 3.4e-90 335.5 233 68.2
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 3.4e-90 335.5 233 68.2
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 5.7e-90 334.7 260 61.9
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 5.7e-90 334.7 236 67.8
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 5.7e-90 334.7 236 67.4
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 5.7e-90 334.7 236 67.4
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.7e-90 334.7 236 66.5
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 5.7e-90 334.7 238 70.2
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 5.7e-90 334.7 238 67.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.2e-89 332.8 236 66.1
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.2e-89 332.8 236 68.6
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.2e-89 332.8 236 68.2
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.9e-89 332.4 236 66.1
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.9e-89 331.6 236 68.2
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 8.3e-89 330.9 305 55.4
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 8.3e-89 330.9 236 68.6
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 1.1e-88 330.5 236 65.3
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.1e-88 330.5 236 68.2
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.4e-88 329.3 236 65.7
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 3.2e-88 328.9 235 69.4
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.4e-88 328.2 236 67.4
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 9.2e-88 327.4 238 67.6
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 9.2e-88 327.4 225 69.8
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 9.2e-88 327.4 282 59.6
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.5e-87 325.5 236 64.8
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 3.5e-87 325.5 272 59.2
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 5.9e-87 324.7 236 66.1
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 5.9e-87 324.7 236 66.9
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 7.8e-87 324.3 236 66.1
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.7e-86 323.2 216 71.3
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 5.0e-86 321.6 202 77.2
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 7.3e-85 317.8 238 65.5
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 7.3e-85 317.8 208 72.6
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.1e-84 316.2 203 73.4
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.8e-84 315.8 231 64.9
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 4.7e-84 315.1 264 62.1
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 6.2e-84 314.7 238 66.0
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 8.9e-83 310.8 233 62.7
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.2e-82 310.5 220 68.2
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 2.0e-82 309.7 216 69.4
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.4e-82 308.9 208 70.7
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 4.4e-82 308.5 204 71.1
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.8e-82 308.1 235 66.4
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 3.7e-81 305.4 236 64.8
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.1e-80 302.0 224 63.4
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 4.1e-80 302.0 239 63.2
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 9.2e-80 300.8 240 58.8
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.2e-79 300.4 237 60.8
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.6e-79 300.1 224 61.2
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.0e-78 297.4 205 70.7
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.3e-78 296.2 233 59.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.9e-77 293.1 206 67.0
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 5.6e-77 291.6 237 63.7
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 5.6e-77 291.6 237 63.7
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.2e-76 290.4 196 69.4
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-75 287.0 238 57.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.4e-75 287.0 238 57.1
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.4e-75 287.0 203 66.5
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.8e-75 286.6 231 62.3
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.3e-75 286.2 188 71.3
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.1e-75 285.8 238 56.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 4.0e-75 285.4 238 57.1
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 6.8e-75 284.6 238 56.3
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 2.0e-74 283.1 225 58.2
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.4e-74 282.3 234 60.7
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.4e-74 282.0 227 62.1
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 2.4e-72 276.2 225 60.0
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.7e-70 270.0 185 71.9
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 8.6e-70 267.7 169 73.4
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.5e-69 266.9 239 55.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 1.2e-66 257.3 223 56.5
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.2e-66 257.3 208 63.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 3.4e-66 255.8 166 71.7
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.4e-64 250.4 219 54.8
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.3e-62 243.8 155 73.5
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 6.6e-62 241.5 239 55.2
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.6e-60 236.9 166 66.9
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 6.2e-60 235.0 239 51.9
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.1e-59 234.2 220 54.5
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 4.0e-59 232.3 226 52.2
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 6.9e-59 231.5 149 72.5
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.4e-56 221.9 210 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 3.6e-52 209.1 167 58.7
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 6.7e-46 188.3 128 69.5
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.8e-44 183.0 236 44.9
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 3.1e-43 179.5 233 43.3
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 9.0e-43 177.9 135 60.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.2e-42 177.6 135 61.5
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.0e-38 164.5 233 43.3
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 3.9e-38 162.5 102 75.5
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.6e-36 157.1 106 68.9
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 6.2e-36 155.2 111 65.8
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.4e-35 154.1 104 70.2
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 5.8e-34 148.7 214 39.7
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 7.9e-31 138.3 113 61.9
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.3e-30 136.7 265 35.5
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.2e-28 130.2 132 46.2
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 6.3e-28 128.6 76 77.6
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.0e-25 121.3 207 33.8
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.8e-22 110.5 218 32.6
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.8e-22 110.5 218 32.6
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.3e-20 104.4 98 60.2
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 2.0e-18 97.1 74 58.1
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.1e-16 91.3 204 32.8
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.4e-16 90.9 65 69.2
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.3e-14 83.6 51 80.4
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.1e-14 82.4 90 44.4
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.6e-13 80.1 55 67.3
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.5e-10 70.9 49 61.2
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 5.9e-10 68.9 50 66.0
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 7.7e-10 68.6 48 58.3
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 1.3e-09 67.8 56 60.7
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 1.2e-07 61.2 50 48.0
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.1e-07 60.5 49 53.1


User provided reference genes

Program Settings