Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003463 Vanilla planifolia HOM05D004139 ORTHO05D004873 2.3e-30 134.8 63 100.0
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 5.3e-27 123.6 63 90.5
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.2e-26 122.5 64 89.1
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 1.5e-26 122.1 63 88.9
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 4.5e-26 120.6 61 86.9
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 4.5e-26 120.6 63 88.9
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 5.8e-26 120.2 63 88.9
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 5.8e-26 120.2 64 89.1
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 5.8e-26 120.2 63 85.7
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 5.8e-26 120.2 64 87.5
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 7.6e-26 119.8 63 87.3
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 7.6e-26 119.8 63 87.3
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 7.6e-26 119.8 63 87.3
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.0e-25 119.4 61 85.2
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 1.3e-25 119.0 63 85.7
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 1.3e-25 119.0 63 85.7
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 1.3e-25 119.0 63 85.7
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.3e-25 119.0 64 85.9
GSVIVG01026958001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.3e-25 119.0 64 89.1
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 1.7e-25 118.6 63 84.1
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.7e-25 118.6 63 87.3
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 2.9e-25 117.9 63 85.7
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 3.8e-25 117.5 64 89.1
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 4.9e-25 117.1 63 81.0
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 4.9e-25 117.1 63 81.0
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 4.9e-25 117.1 63 81.0
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 4.9e-25 117.1 63 81.0
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 4.9e-25 117.1 63 81.0
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 4.9e-25 117.1 63 81.0
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 4.9e-25 117.1 64 84.4
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 6.5e-25 116.7 63 84.1
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 8.4e-25 116.3 63 82.5
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 1.1e-24 115.9 64 87.5
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.1e-24 115.9 64 87.5
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 1.4e-24 115.5 63 79.4
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 1.4e-24 115.5 64 87.5
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.9e-24 115.2 64 85.9
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 1.9e-24 115.2 63 82.5
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 1.9e-24 115.2 63 82.5
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 1.9e-24 115.2 64 85.9
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 1.9e-24 115.2 63 82.5
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 2.5e-24 114.8 64 85.9
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 2.5e-24 114.8 64 85.9
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 3.2e-24 114.4 64 85.9
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 3.2e-24 114.4 63 81.0
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 3.2e-24 114.4 64 84.4
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 3.2e-24 114.4 64 87.5
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 3.2e-24 114.4 63 81.0
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 4.2e-24 114.0 64 82.8
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 4.2e-24 114.0 63 82.5
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 5.5e-24 113.6 63 82.5
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 5.5e-24 113.6 64 84.4
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 5.5e-24 113.6 63 81.0
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 9.3e-24 112.8 63 79.4
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 9.3e-24 112.8 63 79.4
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 9.3e-24 112.8 64 85.9
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 9.3e-24 112.8 63 81.0
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 9.3e-24 112.8 64 81.2
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 1.2e-23 112.5 64 81.2
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.2e-23 112.5 64 81.2
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 1.2e-23 112.5 63 79.4
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 1.6e-23 112.1 64 82.8
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 1.6e-23 112.1 64 81.2
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.6e-23 112.1 64 84.4
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 1.6e-23 112.1 64 84.4
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.1e-23 111.7 64 81.2
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 2.1e-23 111.7 64 84.4
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 2.1e-23 111.7 64 82.8
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 2.7e-23 111.3 63 79.4
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 2.7e-23 111.3 63 79.4
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 2.7e-23 111.3 63 79.4
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 2.7e-23 111.3 64 82.8
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 2.7e-23 111.3 64 82.8
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 3.5e-23 110.9 63 77.8
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 3.5e-23 110.9 64 81.2
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 3.5e-23 110.9 64 81.2
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 3.5e-23 110.9 64 81.2
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 3.5e-23 110.9 64 81.2
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 4.6e-23 110.5 64 82.8
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 4.6e-23 110.5 63 77.8
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 4.6e-23 110.5 64 81.2
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 4.6e-23 110.5 63 79.4
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 4.6e-23 110.5 63 77.8
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 6.0e-23 110.2 64 78.1
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 6.0e-23 110.2 64 81.2
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 6.0e-23 110.2 64 79.7
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 6.0e-23 110.2 64 78.1
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 6.0e-23 110.2 63 82.5
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 7.9e-23 109.8 64 84.4
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 1.0e-22 109.4 63 77.8
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 1.0e-22 109.4 63 77.8
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 1.0e-22 109.4 63 77.8
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 1.0e-22 109.4 64 81.2
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 1.3e-22 109.0 63 76.2
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.3e-22 109.0 64 81.2
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 1.3e-22 109.0 64 79.7
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 1.3e-22 109.0 64 79.7
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 1.8e-22 108.6 63 74.6
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 2.3e-22 108.2 63 79.4
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 2.3e-22 108.2 61 77.0
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 3.9e-22 107.5 61 82.0
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 5.1e-22 107.1 63 77.8
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 6.7e-22 106.7 64 76.6
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 8.7e-22 106.3 62 72.6
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.1e-21 105.9 63 77.8
RcHm_v2.0_Chr1g0357981 Rosa chinensis HOM05D004139 ORTHO05D004873 1.1e-21 105.9 62 83.9
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 1.1e-21 105.9 63 76.2
RcHm_v2.0_Chr5g0017371 Rosa chinensis HOM05D004139 ORTHO05D004873 1.5e-21 105.5 62 82.3
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 2.5e-21 104.8 64 79.7
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.3e-21 104.0 84 66.7
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.3e-21 104.0 84 66.7
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 4.3e-21 104.0 84 66.7
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 4.3e-21 104.0 82 67.1
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 5.7e-21 103.6 61 73.8
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 5.7e-21 103.6 63 79.4
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 5.7e-21 103.6 61 75.4
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 3.7e-20 100.9 63 73.0
RcHm_v2.0_Chr1g0356181 Rosa chinensis HOM05D004139 ORTHO05D004873 3.7e-20 100.9 60 80.0
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 5.3e-19 97.1 63 69.8
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 9.0e-19 96.3 63 73.0
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 9.0e-19 96.3 63 73.0
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 1.5e-18 95.5 64 67.2
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 2.0e-18 95.1 61 72.1
RcHm_v2.0_Chr1g0358141 Rosa chinensis HOM05D004139 ORTHO05D004873 2.6e-18 94.7 52 84.6
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.9e-17 91.3 75 64.0
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.9e-17 91.3 75 64.0
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 1.1e-16 89.4 62 66.1
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.4e-16 89.0 64 65.6
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 8.7e-14 79.7 63 57.1
RcHm_v2.0_Chr1g0357951 Rosa chinensis HOM05D004139 ORTHO05D004873 8.7e-14 79.7 39 89.7
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.5e-13 78.2 46 71.7
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 3.3e-13 77.8 39 87.2
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 5.7e-13 77.0 39 87.2
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 5.7e-13 77.0 61 54.1
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 1.3e-12 75.9 38 86.8
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 1.6e-12 75.5 62 50.0
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 3.7e-12 74.3 63 50.8
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.4e-11 72.4 63 49.2
EL10Ac9g20897 Beta vulgaris HOM05D000877 ORTHO05D012137 5.3e-11 70.5 37 81.1
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 6.9e-11 70.1 49 67.3
CBR_g48408 Chara braunii HOM05D004139 ORTHO05D004873 3.8e-09 64.3 60 48.3
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 1.1e-08 62.8 39 69.2


User provided reference genes

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