Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003459 Vanilla planifolia HOM05D041147 ORTHO05D017225 0.0e+00 1242.3 643 100.0
HPP92_003456 Vanilla planifolia HOM05D041147 ORTHO05D017225 1.6e-158 563.9 297 96.0
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.1e-15 89.4 214 34.1
HPP92_003457 Vanilla planifolia HOM05D001944 ORTHO05D011318 3.3e-15 87.8 117 55.6
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.1e-14 85.1 188 33.0
CSS0041121 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 4.4e-12 77.4 163 33.1
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 5.8e-12 77.0 236 30.5
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 7.6e-12 76.6 96 39.6
Os06g0102900 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D011318 1.3e-11 75.9 169 38.5
CSS0009803 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D017225 1.7e-11 75.5 163 32.5
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 4.9e-11 73.9 158 35.4
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.9e-10 72.0 139 35.3
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.2e-10 71.2 90 41.1
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 1.2e-09 69.3 111 34.2
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.2e-09 69.3 100 37.0
GSVIVG01025215001 Vitis vinifera HOM05D001944 ORTHO05D002405 1.6e-09 68.9 152 34.2
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 2.1e-09 68.6 87 40.2
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.1e-09 68.6 106 37.7
Dinv32719 Davidia involucrata HOM05D001944 ORTHO05D002405 2.7e-09 68.2 97 39.2
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 3.5e-09 67.8 92 42.4
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 3.5e-09 67.8 94 38.3
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 3.5e-09 67.8 146 32.9
AUR62029227 Chenopodium quinoa HOM05D001944 ORTHO05D002405 6.0e-09 67.0 92 40.2
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 6.0e-09 67.0 177 30.5
AUR62022774 Chenopodium quinoa HOM05D001944 ORTHO05D002405 7.8e-09 66.6 92 41.3
Hma1.2p1_0307F.1_g119910 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 7.8e-09 66.6 155 34.8
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.0e-08 66.2 210 29.0
Oeu056302.1 Olea europaea HOM05D001944 ORTHO05D002405 1.0e-08 66.2 130 32.3
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.3e-08 65.9 124 34.7
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 1.3e-08 65.9 162 30.9
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 1.3e-08 65.9 323 27.9
Aqoxy7G00183 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 2.3e-08 65.1 131 32.1
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 2.3e-08 65.1 127 32.3
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 2.3e-08 65.1 95 36.8
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 2.3e-08 65.1 95 36.8
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 2.3e-08 65.1 101 34.7
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 2.3e-08 65.1 240 27.9
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 3.0e-08 64.7 248 28.2
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 5.1e-08 63.9 117 35.0
Lj1A201T36 Lonicera japonica HOM05D001944 ORTHO05D002405 5.1e-08 63.9 153 30.1
Os02g0110700 Oryza sativa ssp. japonica HOM05D041147 ORTHO05D037118 5.1e-08 63.9 87 39.1
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 6.6e-08 63.5 133 35.3
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 6.6e-08 63.5 119 34.5
Sed0024562 Sechium edule HOM05D001944 ORTHO05D002405 8.6e-08 63.2 101 35.6
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 1.1e-07 62.8 143 33.6
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 1.1e-07 62.8 240 27.5
Rhsim01G0215200 Rhododendron simsii HOM05D001944 ORTHO05D014293 1.1e-07 62.8 237 27.4
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 1.1e-07 62.8 127 33.1
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 1.1e-07 62.8 107 33.6
arahy.Tifrunner.gnm1.ann1.ST0ZZW Arachis hypogaea HOM05D001944 ORTHO05D011318 1.5e-07 62.4 120 37.5
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 1.5e-07 62.4 300 23.7
Lalb_Chr01g0004401 Lupinus albus HOM05D001944 ORTHO05D011318 1.5e-07 62.4 151 33.1
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 2.5e-07 61.6 94 35.1
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 2.5e-07 61.6 94 35.1
Lsat_1_v5_gn_1_53160 Lactuca sativa HOM05D001944 ORTHO05D002405 2.5e-07 61.6 97 38.1
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 2.5e-07 61.6 116 34.5
Actinidia20444 Actinidia chinensis HOM05D001944 ORTHO05D002405 3.3e-07 61.2 93 35.5
Lsat_1_v5_gn_1_63980 Lactuca sativa HOM05D001944 ORTHO05D002405 4.3e-07 60.8 324 23.1
Peaxi162Scf00123g00910 Petunia axillaris HOM05D001944 ORTHO05D002405 5.6e-07 60.5 136 29.4
SGA_v2.0_scaffold40G15544 Striga asiatica HOM05D001944 ORTHO05D002405 9.6e-07 59.7 84 39.3
Cpa.g.sc311.2 Carica papaya HOM05D001944 ORTHO05D002405 1.2e-06 59.3 114 33.3
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 1.2e-06 59.3 302 23.5
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 1.2e-06 59.3 94 37.2
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 1.6e-06 58.9 108 33.3
EL10Ac7g16595 Beta vulgaris HOM05D001944 ORTHO05D002405 2.1e-06 58.5 77 39.0
CSS0007832 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 2.1e-06 58.5 96 37.5
CDE02G3605 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 2.1e-06 58.5 87 39.1
vmacro20024 Vaccinium macrocarpon HOM05D001944 ORTHO05D017225 2.1e-06 58.5 132 33.3
arahy.Tifrunner.gnm1.ann1.02PMC1 Arachis hypogaea HOM05D001944 ORTHO05D002405 2.8e-06 58.2 87 36.8
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 3.6e-06 57.8 93 34.4
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 3.6e-06 57.8 104 38.5
Migut.J00530 Erythranthe guttata HOM05D001944 ORTHO05D017225 3.6e-06 57.8 73 37.0
Lj3g0013525 Lotus japonicus HOM05D001944 ORTHO05D002405 3.6e-06 57.8 138 28.3
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 4.7e-06 57.4 108 32.4
arahy.Tifrunner.gnm1.ann1.D4VV12 Arachis hypogaea HOM05D001944 ORTHO05D002405 6.2e-06 57.0 87 35.6
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 6.2e-06 57.0 86 37.2
Glyma.11G196900 Glycine max HOM05D001944 ORTHO05D011318 6.2e-06 57.0 326 23.3
HanXRQChr13g0405021 Helianthus annuus HOM05D001944 ORTHO05D002405 6.2e-06 57.0 108 33.3
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 6.2e-06 57.0 112 32.1
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 8.1e-06 56.6 146 30.8
SalBow3G2448 Salvia bowleyana HOM05D001944 ORTHO05D002405 8.1e-06 56.6 83 32.5
SGA_v2.0_scaffold40G15535 Striga asiatica HOM05D001944 ORTHO05D017225 8.1e-06 56.6 84 38.1


User provided reference genes

Program Settings