Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 2.9e-87 326.2 335 100.0
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 4.9e-47 192.6 174 66.1
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 8.4e-47 191.8 178 66.3
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.4e-46 191.0 176 67.0
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 4.2e-46 189.5 172 68.0
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.2e-46 189.5 177 65.5
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.2e-46 189.5 177 65.5
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 4.2e-46 189.5 177 67.8
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 5.4e-46 189.1 177 65.5
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 5.4e-46 189.1 175 68.0
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 7.1e-46 188.7 178 68.0
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 9.3e-46 188.3 177 65.5
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 9.3e-46 188.3 277 93.1
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 1.2e-45 188.0 177 65.5
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 2.1e-45 187.2 178 66.9
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 3.5e-45 186.4 172 68.0
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 6.0e-45 185.7 182 63.2
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 7.9e-45 185.3 174 68.4
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 7.9e-45 185.3 179 65.9
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 1.0e-44 184.9 174 65.5
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.0e-44 184.9 174 65.5
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 1.0e-44 184.9 177 62.7
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 1.3e-44 184.5 174 65.5
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 1.3e-44 184.5 174 65.5
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 1.3e-44 184.5 174 65.5
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.8e-44 184.1 180 64.4
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 2.3e-44 183.7 176 65.3
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 2.3e-44 183.7 176 65.3
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 2.3e-44 183.7 176 65.3
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 3.9e-44 183.0 175 63.4
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 3.9e-44 183.0 136 69.1
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 3.9e-44 183.0 180 64.4
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 3.9e-44 183.0 175 65.1
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 5.1e-44 182.6 175 64.6
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 5.1e-44 182.6 182 66.5
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 5.1e-44 182.6 178 59.6
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 5.1e-44 182.6 172 65.7
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 6.7e-44 182.2 173 63.0
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 6.7e-44 182.2 174 64.4
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 6.7e-44 182.2 140 67.1
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 6.7e-44 182.2 174 58.6
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 6.7e-44 182.2 174 58.6
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 8.7e-44 181.8 175 67.4
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.5e-43 181.0 143 67.8
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 1.5e-43 181.0 172 56.4
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.5e-43 181.0 176 65.9
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 1.9e-43 180.6 178 66.3
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 4.3e-43 179.5 136 69.1
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 4.3e-43 179.5 177 67.2
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 5.6e-43 179.1 137 69.3
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 5.6e-43 179.1 172 57.0
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 7.4e-43 178.7 141 68.1
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 7.4e-43 178.7 148 65.5
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 9.6e-43 178.3 173 63.6
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 9.6e-43 178.3 121 72.7
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 9.6e-43 178.3 175 65.7
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 9.6e-43 178.3 127 71.7
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 9.6e-43 178.3 127 71.7
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 1.3e-42 177.9 176 62.5
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 1.3e-42 177.9 174 66.1
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 1.3e-42 177.9 127 72.4
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 1.3e-42 177.9 127 71.7
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 1.3e-42 177.9 178 64.6
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 1.6e-42 177.6 187 61.0
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 1.6e-42 177.6 121 73.6
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 2.8e-42 176.8 172 61.6
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 2.8e-42 176.8 174 65.5
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 2.8e-42 176.8 127 72.4
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 2.8e-42 176.8 118 75.4
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 3.7e-42 176.4 174 63.2
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 4.8e-42 176.0 180 62.2
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 4.8e-42 176.0 178 65.7
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 4.8e-42 176.0 175 64.0
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 4.8e-42 176.0 121 72.7
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 6.2e-42 175.6 178 63.5
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 6.2e-42 175.6 174 63.2
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 8.1e-42 175.3 172 59.9
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 1.1e-41 174.9 120 75.0
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.1e-41 174.9 137 66.4
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.1e-41 174.9 144 63.9
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.1e-41 174.9 144 63.9
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 1.1e-41 174.9 181 61.9
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 1.1e-41 174.9 176 61.9
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 1.4e-41 174.5 139 64.0
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 1.4e-41 174.5 178 62.9
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 1.4e-41 174.5 180 64.4
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 1.8e-41 174.1 175 65.1
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 1.8e-41 174.1 176 61.9
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 1.8e-41 174.1 178 59.0
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 2.4e-41 173.7 180 63.9
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 2.4e-41 173.7 179 60.3
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 2.4e-41 173.7 178 61.8
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 3.1e-41 173.3 172 66.3
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 4.0e-41 172.9 172 64.0
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 5.3e-41 172.6 117 73.5
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 6.9e-41 172.2 180 60.6
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 6.9e-41 172.2 147 63.3
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 6.9e-41 172.2 177 60.5
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.2e-40 171.4 166 59.6
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.2e-40 171.4 166 57.8
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.2e-40 171.4 173 62.4
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 1.2e-40 171.4 182 53.8
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 4.5e-40 169.5 164 65.9
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 5.8e-40 169.1 200 57.0
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 5.8e-40 169.1 127 67.7
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 7.6e-40 168.7 127 68.5
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 1.3e-39 167.9 177 60.5
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 1.7e-39 167.5 178 62.4
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 2.2e-39 167.2 173 54.9
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 3.8e-39 166.4 139 66.2
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 3.8e-39 166.4 140 66.4
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 4.9e-39 166.0 180 59.4
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 6.4e-39 165.6 139 64.7
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 6.4e-39 165.6 139 64.0
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 8.4e-39 165.2 179 58.7
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 1.1e-38 164.9 174 57.5
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 1.1e-38 164.9 180 58.9
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 1.4e-38 164.5 172 62.8
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 1.4e-38 164.5 172 62.8
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 1.4e-38 164.5 172 62.8
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 1.4e-38 164.5 140 62.9
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.4e-38 164.5 169 58.6
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 1.9e-38 164.1 129 65.9
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 3.2e-38 163.3 178 58.4
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 4.2e-38 162.9 115 72.2
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 7.1e-38 162.2 116 71.6
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 9.3e-38 161.8 168 54.2
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 1.2e-37 161.4 124 66.9
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.1e-37 160.6 119 68.9
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 4.6e-37 159.5 174 56.9
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.0e-36 158.3 142 58.5
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 8.7e-36 155.2 144 60.4
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 1.1e-35 154.8 178 55.1
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 3.3e-35 153.3 130 62.3
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 4.3e-35 152.9 143 60.1
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.3e-35 152.9 115 67.0
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.3e-35 152.9 115 67.0
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 7.4e-35 152.1 143 56.6
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 7.4e-35 152.1 180 51.1
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 1.1e-33 148.3 126 62.7
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 6.0e-29 132.5 100 70.0
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.9e-27 127.5 100 69.0
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 1.4e-25 121.3 110 58.2
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.4e-25 121.3 100 65.0
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 3.1e-25 120.2 113 60.2
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 9.0e-25 118.6 95 66.3
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.3e-18 98.2 82 61.0
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 1.2e-16 91.7 76 67.1
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 1.5e-16 91.3 180 43.3
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 5.9e-16 89.4 47 87.2
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 5.9e-16 89.4 47 87.2
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.0e-15 88.6 52 76.9
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.8e-15 86.7 116 46.6
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 6.7e-12 75.9 45 80.0
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.4e-11 73.2 81 55.6
Cre09.g389652 Chlamydomonas reinhardtii HOM05D004676 ORTHO05D005661 1.7e-07 61.2 120 35.8
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 2.2e-07 60.8 40 67.5


User provided reference genes

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