Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.6e-53 212.6 113 100.0
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 8.0e-42 173.7 111 79.3
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.7e-39 166.0 111 74.8
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 3.7e-39 164.9 111 76.6
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.4e-38 162.9 113 76.1
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.8e-38 162.5 112 75.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.4e-38 162.2 112 75.9
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.4e-38 162.2 111 75.7
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 77.0
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 3.1e-38 161.8 114 73.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.1e-38 161.8 112 76.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 4.1e-38 161.4 111 73.9
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.2e-37 159.8 111 73.0
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.2e-37 159.8 111 73.0
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 72.8
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 72.8
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 73.7
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.0e-37 159.1 111 72.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.0e-37 159.1 113 75.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.0e-37 159.1 112 74.1
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 2.7e-37 158.7 111 73.0
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.7e-37 158.7 114 73.7
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 4.5e-37 157.9 112 73.2
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 4.5e-37 157.9 113 74.3
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 4.5e-37 157.9 113 74.3
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.5e-37 157.9 113 74.3
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.5e-37 157.9 113 74.3
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 4.5e-37 157.9 112 74.1
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 4.5e-37 157.9 112 73.2
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 5.9e-37 157.5 111 73.9
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 5.9e-37 157.5 112 73.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 7.7e-37 157.1 113 73.5
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 7.7e-37 157.1 112 72.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 7.7e-37 157.1 112 73.2
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.0e-36 156.8 109 75.2
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.0e-36 156.8 112 72.3
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.0e-36 156.8 112 72.3
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.0e-36 156.8 112 73.2
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 73.2
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 73.2
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 73.2
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 72.3
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 72.3
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.3e-36 156.4 112 72.3
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.7e-36 156.0 112 72.3
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.7e-36 156.0 114 71.9
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 2.2e-36 155.6 112 72.3
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 2.9e-36 155.2 114 72.8
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.9e-36 155.2 111 71.2
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.8e-36 154.8 114 71.9
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 5.0e-36 154.5 108 71.3
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 6.5e-36 154.1 112 68.8
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 6.5e-36 154.1 112 72.3
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 8.5e-36 153.7 112 72.3
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.1e-35 153.3 112 72.3
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.1e-35 153.3 112 71.4
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.9e-35 152.5 113 70.8
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.9e-35 152.5 113 71.7
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.9e-35 152.5 112 69.6
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 3.2e-35 151.8 108 74.1
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.2e-35 151.4 112 70.5
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.2e-35 151.4 112 70.5
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.2e-35 151.4 112 70.5
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 5.5e-35 151.0 108 74.1
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 5.5e-35 151.0 114 71.1
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 5.5e-35 151.0 109 69.7
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 7.2e-35 150.6 112 69.6
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 7.2e-35 150.6 111 70.3
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 9.5e-35 150.2 105 74.3
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.2e-34 149.8 108 70.4
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.2e-34 149.8 114 68.4
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.2e-34 149.8 112 68.8
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.2e-34 149.8 113 70.8
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.1e-34 149.1 112 70.5
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.8e-34 148.7 105 73.3
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 2.8e-34 148.7 110 67.3
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 2.8e-34 148.7 113 69.0
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 3.6e-34 148.3 112 68.8
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 4.7e-34 147.9 104 75.0
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.1e-34 147.5 112 67.0
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.1e-34 147.5 112 67.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 6.1e-34 147.5 114 66.7
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 6.1e-34 147.5 107 71.0
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 8.0e-34 147.1 112 69.6
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 8.0e-34 147.1 105 73.3
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 8.0e-34 147.1 112 67.0
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 1.0e-33 146.7 112 69.6
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.0e-33 146.7 114 65.8
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.0e-33 146.7 114 67.5
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.8e-33 146.0 112 67.0
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.8e-33 146.0 112 67.0
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.8e-33 146.0 109 68.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.3e-33 145.6 112 68.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 4.0e-33 144.8 107 69.2
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 4.0e-33 144.8 112 67.0
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 6.8e-33 144.1 107 69.2
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 8.8e-33 143.7 104 72.1
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.2e-32 143.3 107 68.2
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.2e-32 143.3 107 68.2
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.2e-32 143.3 107 68.2
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.2e-32 143.3 107 68.2
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.5e-32 142.9 112 66.1
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 2.6e-32 142.1 113 68.1
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.4e-32 141.7 144 58.3
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.4e-32 141.7 143 57.3
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.7e-32 141.0 112 67.0
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 7.5e-32 140.6 107 67.3
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.7e-31 139.4 113 67.3
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.8e-31 138.7 107 67.3
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.7e-31 138.3 113 62.8
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.8e-30 136.0 77 88.3
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.1e-30 135.2 108 64.8
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 7.0e-30 134.0 79 84.8
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.0e-29 132.5 77 84.4
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.7e-29 132.1 77 84.4
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.7e-29 132.1 140 55.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.0e-28 130.2 77 84.4
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.9e-28 128.6 77 83.1
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 4.3e-27 124.8 111 56.8
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.0e-26 120.6 90 70.0
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.4e-25 119.8 93 66.7
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 2.3e-25 119.0 77 76.6
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 2.3e-25 119.0 77 76.6
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 3.4e-24 115.2 65 86.2
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.9e-23 112.1 77 70.1
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.8e-22 109.4 72 77.8
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.9e-20 101.7 106 50.0
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.1e-19 100.1 102 51.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-19 99.8 85 64.7
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 5.6e-19 97.8 77 67.5
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 2.1e-18 95.9 81 61.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.6e-18 95.1 102 52.9
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 3.6e-18 95.1 111 53.2
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-16 89.7 70 64.3
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.5e-16 89.7 111 45.9
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 5.8e-16 87.8 70 62.9
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.3e-15 84.0 79 51.9
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.4e-14 83.2 68 64.7
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 4.1e-14 81.6 51 80.4
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 7.0e-14 80.9 45 88.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-13 80.1 99 47.5
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.2e-13 80.1 101 46.5
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.0e-12 77.0 50 76.0
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.0e-12 75.5 43 86.0
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 5.0e-12 74.7 105 41.9
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.6e-12 74.3 104 43.3
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 6.6e-12 74.3 42 85.7
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-11 73.6 51 72.5
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.9e-11 72.8 43 83.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 2.5e-11 72.4 62 61.3
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.6e-10 69.7 61 57.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.6e-10 69.7 56 69.6
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.6e-10 69.7 108 40.7
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.6e-10 68.6 80 51.2
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 4.7e-10 68.2 40 82.5
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.0e-08 62.8 59 49.2
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 1.3e-07 60.1 52 55.8
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.2e-07 59.3 35 80.0
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 3.2e-06 55.5 52 55.8
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 5.4e-06 54.7 53 50.9


User provided reference genes

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