Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 7.8e-302 1039.6 516 100.0
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.3e-200 703.4 520 67.5
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 5.0e-200 701.4 521 67.4
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.9e-195 684.9 514 66.0
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 5.0e-192 674.9 518 64.7
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 8.6e-192 674.1 514 65.2
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.4e-189 666.8 514 63.8
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.3e-187 660.2 519 63.8
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 6.4e-187 657.9 519 64.5
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 1.0e-184 650.6 515 63.9
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 6.6e-184 647.9 517 60.9
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.9e-183 646.4 517 61.3
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 2.5e-183 646.0 515 61.6
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 3.3e-183 645.6 514 60.5
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 4.3e-183 645.2 514 63.4
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.8e-181 639.8 520 62.1
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 6.8e-181 637.9 514 60.7
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 6.8e-181 637.9 517 60.5
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 8.9e-181 637.5 520 60.6
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 8.9e-181 637.5 529 60.3
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.2e-180 637.1 522 60.5
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.5e-180 636.7 514 60.7
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.0e-180 636.3 518 60.6
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.4e-180 635.6 513 59.8
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 4.4e-180 635.2 517 59.6
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 7.5e-180 634.4 518 61.0
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 9.9e-180 634.0 513 60.0
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.3e-179 633.6 519 61.5
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.7e-179 633.3 519 60.1
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.2e-179 632.9 513 59.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 3.7e-179 632.1 517 59.6
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 4.9e-179 631.7 519 61.7
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 1.1e-178 630.6 516 61.4
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.4e-178 630.2 516 61.6
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.4e-178 629.4 522 61.5
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 4.1e-178 628.6 512 60.4
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 7.1e-178 627.9 513 59.6
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.6e-177 626.7 520 60.8
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.7e-177 625.9 519 61.5
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 6.0e-177 624.8 534 58.4
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.0e-176 624.0 506 60.9
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.0e-176 624.0 518 60.4
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.3e-176 623.6 520 59.6
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.7e-176 623.2 528 59.1
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 3.0e-176 622.5 516 60.9
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 3.0e-176 622.5 514 58.8
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 3.9e-176 622.1 508 63.6
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.6e-176 621.3 519 60.5
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 6.6e-176 621.3 535 59.1
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.9e-175 619.8 523 58.9
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 3.3e-175 619.0 515 59.8
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 3.3e-175 619.0 531 58.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 7.3e-175 617.8 514 60.3
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.8e-174 615.9 512 58.6
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 3.6e-174 615.5 496 62.7
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.1e-173 614.0 525 58.5
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 8.9e-173 610.9 572 54.2
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.5e-172 610.1 521 58.2
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 7.6e-172 607.8 513 58.3
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.9e-170 603.2 506 58.7
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 3.9e-168 595.5 513 58.1
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 3.9e-168 595.5 530 58.3
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 6.2e-166 588.2 541 55.1
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 6.9e-165 584.7 539 55.8
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 1.5e-164 583.6 606 51.7
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 3.8e-163 578.9 517 57.4
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 2.3e-160 569.7 514 56.6
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.5e-159 567.0 535 53.5
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 4.8e-158 562.0 402 68.4
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 1.4e-157 560.5 514 54.1
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.2e-156 557.4 516 53.7
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 2.0e-156 556.6 539 52.9
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.7e-155 553.5 530 52.6
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 9.3e-154 547.7 529 52.6
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 9.3e-154 547.7 522 52.9
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.2e-153 547.4 522 52.9
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.2e-153 547.4 522 52.9
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.2e-153 547.4 522 52.9
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.2e-153 547.4 521 53.2
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 4.6e-153 545.4 522 52.7
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 6.7e-152 541.6 566 49.6
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.1e-151 540.8 515 54.8
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 4.3e-151 538.9 496 56.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 7.6e-148 528.1 561 52.0
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.7e-147 526.9 506 54.5
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 7.4e-143 511.5 459 55.8
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 2.0e-140 503.4 512 52.3
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.0e-136 491.1 410 59.5
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.3e-135 486.1 370 64.3
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 1.4e-128 464.2 347 64.6
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 3.0e-112 409.8 386 54.9
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.3e-107 394.4 517 42.7
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 5.0e-107 392.5 528 42.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 4.7e-105 386.0 521 44.3
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.7e-100 370.2 474 46.2
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 8.5e-99 365.2 279 63.1
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 2.2e-94 350.5 532 40.2
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.0e-88 330.1 565 35.4
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.8e-86 323.6 255 63.1
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.7e-86 323.2 255 62.4
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.3e-86 322.4 500 41.6
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 2.3e-80 303.9 265 57.7
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 2.0e-71 274.2 245 56.7
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 1.7e-67 261.2 205 62.0
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.2e-65 255.0 288 45.5
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.8e-64 251.1 467 37.5
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 2.3e-64 250.8 240 52.1
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.4e-62 242.7 222 57.2
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 5.4e-61 239.6 224 52.2
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 3.6e-57 226.9 242 49.6
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.3e-54 218.4 223 54.3
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 1.1e-48 198.7 183 57.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.4e-48 197.6 385 31.2
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.4e-40 171.0 180 47.2
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 5.3e-40 169.9 332 35.5
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 5.4e-37 159.8 253 40.7
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 3.0e-35 154.1 146 52.7
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 3.7e-33 147.1 263 36.9
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 3.5e-28 130.6 490 26.1
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.9e-26 124.8 121 56.2
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 8.2e-25 119.4 87 66.7
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 6.5e-22 109.8 107 49.5
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.7e-20 104.4 117 47.9
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.9e-18 98.2 174 35.6
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.7e-18 95.9 101 52.5
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 7.2e-13 79.7 127 37.0
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 2.7e-12 77.8 52 57.7
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 1.1e-08 65.9 57 49.1
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 6.5e-06 56.6 87 36.8


User provided reference genes

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