Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 0.0e+00 1199.1 629 100.0
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 3.6e-176 622.5 627 53.9
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.0e-170 602.8 629 51.4
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.3e-167 593.2 626 51.8
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 6.4e-165 585.1 623 52.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.1e-164 584.3 628 51.6
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 2.4e-164 583.2 626 50.8
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.6e-163 580.5 624 51.8
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 7.8e-163 578.2 627 50.1
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 1.7e-162 577.0 632 51.3
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.1e-160 570.1 635 49.8
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.4e-159 567.4 627 50.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.8e-159 567.0 635 49.0
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 3.1e-159 566.2 627 49.9
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 3.1e-159 566.2 628 48.9
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.2e-158 564.3 624 49.7
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.0e-158 563.5 630 49.7
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 9.9e-158 561.2 623 49.4
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 9.9e-158 561.2 631 49.9
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.3e-157 560.8 626 50.3
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 8.4e-157 558.1 630 49.2
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.4e-157 558.1 630 49.4
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.1e-156 557.8 626 49.4
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.4e-156 557.4 628 49.7
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.4e-156 556.6 630 48.4
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.4e-156 556.6 626 48.9
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 4.2e-156 555.8 628 50.2
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.6e-155 553.9 631 49.1
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.6e-155 552.4 628 48.9
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 7.8e-155 551.6 631 48.0
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.9e-154 549.3 622 49.8
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 6.6e-154 548.5 630 49.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.7e-154 548.1 635 48.5
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 8.7e-154 548.1 623 49.9
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.1e-153 547.7 633 48.7
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.9e-153 547.0 629 48.3
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 2.5e-153 546.6 623 48.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 3.3e-153 546.2 619 50.2
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.3e-153 546.2 629 47.9
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 5.6e-153 545.4 640 46.7
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 9.6e-153 544.7 626 49.4
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-152 543.9 631 49.1
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 2.1e-152 543.5 663 47.7
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.8e-152 543.1 622 49.8
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 3.6e-152 542.7 620 48.1
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 4.8e-152 542.3 630 48.3
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.1e-151 541.2 619 49.9
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.4e-151 540.8 627 48.0
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.4e-151 540.8 658 47.0
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 4.0e-151 539.3 589 50.1
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 6.9e-151 538.5 610 47.9
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.5e-150 537.3 622 47.6
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.4e-150 536.2 619 47.5
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 9.9e-150 534.6 619 47.3
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 4.9e-149 532.3 619 47.2
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 8.4e-149 531.6 630 47.8
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 8.4e-149 531.6 631 48.5
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.1e-148 531.2 641 47.7
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.9e-148 530.4 622 46.9
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.9e-148 530.4 622 46.9
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.9e-148 530.4 626 46.3
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.4e-148 530.0 622 46.9
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 4.2e-148 529.3 654 46.8
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 7.9e-147 525.0 621 47.2
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 7.9e-147 525.0 632 47.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.3e-146 524.2 620 46.9
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.1e-145 521.2 620 46.9
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 7.4e-145 518.5 636 48.0
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.6e-144 517.3 570 49.8
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.4e-143 514.2 588 48.0
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.9e-143 511.9 630 47.1
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.8e-142 508.8 600 47.0
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.7e-141 507.3 631 47.4
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.4e-140 503.4 566 49.3
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 2.7e-139 500.0 626 46.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.5e-139 499.6 510 52.4
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.9e-139 498.4 510 52.2
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 3.0e-138 496.5 665 44.4
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 4.3e-137 492.7 568 48.2
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 9.6e-137 491.5 624 47.3
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.1e-135 488.0 535 50.1
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 6.5e-133 478.8 627 42.1
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 9.3e-132 474.9 622 44.5
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 7.9e-131 471.9 519 48.7
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.5e-124 450.3 527 46.5
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 2.5e-124 450.3 572 46.7
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.8e-119 434.1 514 48.1
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 6.9e-119 432.2 546 46.7
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 6.9e-119 432.2 608 43.8
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.9e-116 424.1 465 49.9
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.5e-116 423.7 558 45.0
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 7.9e-115 418.7 624 41.7
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.0e-114 418.3 465 47.7
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 7.4e-113 412.1 631 41.5
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.0e-110 404.1 461 47.9
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 3.8e-109 399.8 582 42.8
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.5e-105 387.9 448 49.3
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 4.8e-104 382.9 653 38.3
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 7.7e-94 349.0 385 47.0
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.4e-82 311.6 369 49.1
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.8e-82 311.2 643 31.4
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.2e-81 308.5 631 31.4
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 3.0e-74 283.9 387 46.3
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 1.4e-71 275.0 621 31.6
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 5.8e-65 253.1 504 30.6
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 2.7e-62 244.2 627 31.1
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 4.3e-52 210.3 370 36.5
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 3.1e-50 204.1 367 38.4
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 5.4e-47 193.4 511 30.5
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 5.4e-47 193.4 511 30.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.2e-46 192.2 263 39.9
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 2.2e-40 171.4 259 37.8
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.9e-39 168.3 259 37.5
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 8.1e-35 152.9 187 44.9
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.1e-31 142.5 401 27.9
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.8e-29 135.2 135 50.4
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 3.8e-24 117.5 169 40.2
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 8.4e-24 116.3 215 37.2
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.1e-23 115.9 163 42.9
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.2e-23 114.0 174 40.8
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.6e-22 112.1 331 29.0
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 2.7e-22 111.3 163 41.7
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 3.5e-22 110.9 152 39.5
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.0e-22 110.2 132 50.0
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.8e-21 108.6 400 27.8
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 6.2e-19 100.1 167 32.9
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.4e-15 89.0 363 28.4
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 3.2e-15 87.8 135 40.0
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 4.2e-15 87.4 116 47.4
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.7e-14 84.7 151 33.1
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 3.9e-13 80.9 88 54.5
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 6.7e-13 80.1 89 48.3
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 6.7e-13 80.1 60 61.7
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 8.7e-13 79.7 69 55.1
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 6.9e-10 70.1 79 48.1
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.2e-09 69.3 61 55.7
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.0e-08 66.2 120 35.0
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 1.1e-07 62.8 77 40.3
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 2.1e-06 58.5 164 25.6


User provided reference genes

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