Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 8.6e-290 999.6 495 100.0
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 1.1e-124 451.1 519 47.0
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 1.5e-124 450.7 533 47.7
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 3.7e-123 446.0 540 45.4
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 3.7e-123 446.0 587 43.4
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 4.8e-123 445.7 542 45.9
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 2.4e-122 443.4 572 44.2
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 1.5e-121 440.7 569 44.8
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 2.0e-121 440.3 531 45.8
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 2.0e-121 440.3 607 43.0
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 1.3e-120 437.6 537 45.1
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 1.7e-120 437.2 532 46.1
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 3.8e-120 436.0 586 43.0
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 3.2e-119 433.0 575 43.5
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 5.5e-119 432.2 522 45.6
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 2.7e-118 429.9 549 43.5
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 4.6e-118 429.1 278 79.9
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 1.3e-117 427.6 546 42.7
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.8e-117 427.2 581 42.3
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 3.9e-117 426.0 595 42.0
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 1.9e-116 423.7 615 41.0
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 2.5e-116 423.3 609 41.1
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 5.6e-116 422.2 591 40.9
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 7.4e-116 421.8 614 41.5
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 1.6e-115 420.6 539 43.0
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 1.6e-115 420.6 602 41.2
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 4.8e-115 419.1 633 39.5
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 8.2e-115 418.3 596 41.4
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 1.8e-114 417.2 532 44.9
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 4.0e-114 416.0 573 42.9
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 9.0e-114 414.8 634 39.4
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 9.0e-114 414.8 545 42.8
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.2e-113 414.5 606 39.9
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 1.2e-113 414.5 574 43.2
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 2.0e-113 413.7 596 41.1
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 2.0e-113 413.7 532 43.0
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 5.8e-113 412.1 582 40.4
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 7.6e-113 411.8 540 44.1
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.3e-112 411.0 559 42.4
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 2.2e-112 410.2 587 39.9
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 1.4e-111 407.5 571 42.6
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 1.4e-111 407.5 503 43.9
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 3.2e-111 406.4 538 43.9
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 3.2e-111 406.4 578 40.3
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 3.2e-111 406.4 585 41.0
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 5.5e-111 405.6 571 42.0
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 1.2e-110 404.4 572 41.6
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 6.0e-110 402.1 552 42.0
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 1.0e-109 401.4 599 40.7
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 1.0e-109 401.4 572 40.9
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 1.0e-109 401.4 582 40.7
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 3.9e-109 399.4 552 41.8
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 5.1e-109 399.1 612 39.9
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 1.5e-108 397.5 583 40.8
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 2.5e-108 396.7 543 41.6
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 3.3e-108 396.4 631 38.7
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 4.3e-108 396.0 585 40.7
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 4.3e-108 396.0 600 41.0
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 9.7e-108 394.8 553 40.9
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 2.2e-107 393.7 559 41.9
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 2.2e-107 393.7 573 41.0
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 4.8e-107 392.5 599 39.9
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 1.1e-106 391.3 507 44.2
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 1.1e-106 391.3 507 44.2
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 1.4e-106 391.0 608 37.8
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 1.8e-106 390.6 563 42.1
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 3.1e-106 389.8 509 42.8
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 3.1e-106 389.8 544 41.4
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 7.6e-105 385.2 548 41.1
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 1.3e-104 384.4 622 37.3
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 1.7e-104 384.0 509 42.4
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 1.7e-104 384.0 582 37.8
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 6.5e-104 382.1 551 40.3
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 6.5e-104 382.1 491 43.4
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 8.5e-104 381.7 592 39.2
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 1.1e-103 381.3 560 40.7
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 1.9e-103 380.6 554 39.9
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 4.6e-102 375.9 483 42.4
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 6.1e-102 375.6 598 38.8
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 2.2e-99 367.1 607 39.0
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.6e-97 360.1 546 38.6
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 5.9e-97 359.0 578 39.1
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 1.3e-96 357.8 666 36.5
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 7.2e-95 352.1 745 33.4
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 9.4e-95 351.7 592 38.2
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 2.1e-94 350.5 530 38.7
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.2e-88 330.5 658 34.2
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.1e-78 297.4 512 36.5
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 7.7e-73 278.9 416 40.6
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 8.0e-70 268.9 475 35.2
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 2.9e-64 250.4 526 33.3
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 5.5e-63 246.1 314 42.7
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 1.0e-61 241.9 198 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 2.0e-57 227.6 804 25.1
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 1.8e-53 214.5 228 49.1
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 8.9e-53 212.2 200 52.5
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 5.8e-52 209.5 176 56.2
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 5.8e-52 209.5 415 34.2
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 4.1e-50 203.4 334 39.8
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 5.4e-50 203.0 154 60.4
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 3.5e-49 200.3 157 61.8
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 9.5e-47 192.2 756 23.0
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 8.9e-45 185.7 177 49.2
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 9.8e-44 182.2 144 58.3
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 4.1e-42 176.8 162 53.1
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 3.9e-40 170.2 472 28.8
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 2.2e-35 154.5 204 37.3
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 2.2e-35 154.5 204 37.3
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.7e-32 144.8 121 56.2
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 1.5e-31 141.7 121 55.4
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 7.1e-26 122.9 103 60.2
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 2.8e-22 110.9 184 35.9
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.1e-21 109.0 125 45.6
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 2.4e-21 107.8 76 63.2
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 6.9e-21 106.3 91 53.8
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 6.9e-21 106.3 308 28.9
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 9.0e-21 105.9 71 70.4
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.7e-19 101.7 135 43.0
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 8.4e-19 99.4 65 67.7
SEGI_33554 Sequoiadendron giganteum HOM05D002556 ORTHO05D003153 5.4e-18 96.7 201 27.9
Cfa015509 Carpinus fangiana HOM05D002556 ORTHO05D003153 2.1e-17 94.7 212 27.8
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 3.5e-17 94.0 92 44.6
Ca_00583_v3 Cicer arietinum L. HOM05D002556 ORTHO05D003153 2.3e-16 91.3 199 28.1
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.3e-16 91.3 56 64.3
Haze_01041 Corylus avellana HOM05D002556 ORTHO05D003153 3.0e-16 90.9 196 28.6
QL06p006973 Quercus lobata HOM05D002556 ORTHO05D003153 5.1e-16 90.1 322 25.8
CiPaw.01G154300 Carya illinoinensis HOM05D002556 ORTHO05D003153 6.6e-16 89.7 203 27.6
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 6.6e-16 89.7 65 58.5
Pp3c7_24750 Physcomitrium patens HOM05D002556 ORTHO05D003153 1.5e-15 88.6 193 26.9
Pp3c7_24754 Physcomitrium patens HOM05D002556 ORTHO05D003153 1.5e-15 88.6 193 26.9
Sc24g0003990 Simmondsia chinensis HOM05D002556 ORTHO05D003153 2.5e-15 87.8 179 29.1
AL6G49810 Arabidopsis lyrata HOM05D002556 ORTHO05D003153 3.3e-15 87.4 194 27.8
AT4G03130 Arabidopsis thaliana HOM05D002556 ORTHO05D003153 3.3e-15 87.4 201 27.9
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 3.3e-15 87.4 301 28.2
Os01g0939300 Oryza sativa ssp. japonica HOM05D002556 ORTHO05D003153 3.3e-15 87.4 198 26.3
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 3.3e-15 87.4 60 63.3
Lj6g0020599 Lotus japonicus HOM05D002556 ORTHO05D003153 4.3e-15 87.0 199 27.1
Carub.0006s3392 Capsella rubella HOM05D002556 ORTHO05D003153 5.6e-15 86.7 194 26.3
Psat1g186720 Pisum sativum HOM05D002556 ORTHO05D003153 9.6e-15 85.9 203 27.6
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 9.6e-15 85.9 69 58.0
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 9.6e-15 85.9 148 34.5
TPR.G1514 Trifolium pratense HOM05D002556 ORTHO05D003153 1.3e-14 85.5 199 26.6
Medtr2g020440 Medicago truncatula HOM05D002556 ORTHO05D003153 1.6e-14 85.1 196 27.6
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 2.1e-14 84.7 110 44.5
Aqoxy5G00635 Aquilegia oxysepala HOM05D002556 ORTHO05D003153 3.6e-14 84.0 194 26.3
Manes.03G190200 Manihot esculenta HOM05D002556 ORTHO05D003153 8.1e-14 82.8 312 24.4
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 8.1e-14 82.8 68 52.9
Lalb_Chr18g0047501 Lupinus albus HOM05D002556 ORTHO05D003153 1.4e-13 82.0 181 28.7
Cc01_g20180 Coffea canephora HOM05D002556 ORTHO05D003153 2.4e-13 81.3 195 25.6
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.1e-13 80.9 56 62.5
Pp3c11_4990 Physcomitrium patens HOM05D002556 ORTHO05D003153 3.1e-13 80.9 220 25.0
Hund18028 Selenicereus undatus HOM05D002556 ORTHO05D003153 3.1e-13 80.9 176 29.0
Lalb_Chr18g0055801 Lupinus albus HOM05D002556 ORTHO05D003153 5.3e-13 80.1 205 26.3
CSS0031733 Camellia sinensis var. sinensis HOM05D002556 ORTHO05D003153 6.9e-13 79.7 200 29.5
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.2e-12 79.0 60 60.0
arahy.Tifrunner.gnm1.ann1.I12U39 Arachis hypogaea HOM05D002556 ORTHO05D003153 1.5e-12 78.6 196 26.0
Thecc.01G289800 Theobroma cacao HOM05D002556 ORTHO05D003153 1.5e-12 78.6 196 26.0
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 2.0e-12 78.2 67 52.2
arahy.Tifrunner.gnm1.ann1.CR3TYE Arachis hypogaea HOM05D002556 ORTHO05D003153 2.6e-12 77.8 196 27.0
SGA_v2.0_scaffold11G05759 Striga asiatica HOM05D002556 ORTHO05D003153 2.6e-12 77.8 193 24.4
Hma1.2p1_0209F.1_g089150 Hydrangea macrophylla HOM05D002556 ORTHO05D003153 3.4e-12 77.4 194 24.7
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 3.4e-12 77.4 77 45.5
PGR044G1086 Punica granatum HOM05D002556 ORTHO05D003153 7.6e-12 76.3 194 25.8
PGR088G0009 Punica granatum HOM05D002556 ORTHO05D003153 7.6e-12 76.3 194 25.8
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 9.9e-12 75.9 63 60.3
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 9.9e-12 75.9 175 27.4
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 8.7e-08 62.8 80 41.2


User provided reference genes

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