Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 0.0e+00 1105.5 560 100.0
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 2.2e-177 626.3 502 63.9
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 5.0e-177 625.2 542 59.8
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 2.7e-175 619.4 511 61.6
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 7.9e-175 617.8 510 61.2
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 5.1e-174 615.1 502 61.0
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 2.0e-173 613.2 533 58.9
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 3.3e-173 612.5 508 62.0
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 3.3e-173 612.5 519 60.1
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 5.7e-173 611.7 534 60.1
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 2.2e-172 609.8 485 63.5
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.2e-172 609.8 555 55.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 8.2e-172 607.8 520 59.6
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 8.2e-172 607.8 508 59.6
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.8e-171 606.7 549 57.7
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.5e-170 603.6 501 61.7
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 3.4e-170 602.4 490 63.3
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 5.9e-170 601.7 550 56.5
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.0e-169 600.9 484 62.6
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.2e-169 599.7 472 64.2
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 2.9e-169 599.4 510 59.8
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 3.8e-169 599.0 510 60.2
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.8e-169 599.0 510 60.8
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 6.5e-169 598.2 490 63.3
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 8.5e-169 597.8 485 61.2
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.4e-168 597.0 485 64.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.4e-168 597.0 520 59.6
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.9e-168 596.7 553 57.3
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.9e-168 596.7 509 59.1
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 4.2e-168 595.5 531 58.4
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 4.2e-168 595.5 513 60.4
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 7.2e-168 594.7 524 59.5
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 7.2e-168 594.7 517 57.4
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.6e-167 593.6 517 57.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.6e-167 593.6 489 62.6
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 3.6e-167 592.4 515 60.8
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.7e-167 592.0 514 58.0
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 6.1e-167 591.7 489 62.2
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 7.9e-167 591.3 488 60.7
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 1.4e-166 590.5 494 61.5
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.8e-166 590.1 520 59.2
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.3e-166 589.7 485 60.0
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 3.0e-166 589.3 509 58.7
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 3.9e-166 589.0 520 59.2
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 6.7e-166 588.2 489 59.9
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 6.7e-166 588.2 526 57.4
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.0e-165 586.6 510 59.4
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 4.4e-165 585.5 534 58.2
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-164 583.6 519 58.6
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 3.7e-164 582.4 512 59.2
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.8e-164 582.0 534 57.3
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 6.3e-164 581.6 529 57.7
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 6.3e-164 581.6 499 59.1
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.1e-163 579.3 495 60.0
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.0e-163 578.2 542 55.2
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.0e-162 576.6 522 57.1
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 3.5e-162 575.9 491 61.9
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.5e-162 575.9 486 59.9
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 5.9e-162 575.1 539 54.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.8e-161 572.4 486 60.3
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.5e-160 569.7 528 56.1
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.5e-160 569.7 487 58.3
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.5e-160 568.5 522 55.9
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.6e-159 567.0 504 58.7
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.1e-159 566.6 486 57.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.4e-158 563.9 499 58.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.0e-158 562.8 486 59.9
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 5.2e-158 562.0 490 57.6
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 5.2e-158 562.0 486 58.0
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.2e-157 560.8 518 55.8
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.5e-157 560.5 485 61.0
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.3e-157 559.3 475 61.1
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.9e-153 546.2 506 58.7
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.8e-153 545.8 509 55.2
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.9e-152 543.5 534 56.9
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 5.5e-152 542.0 505 53.9
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 7.2e-152 541.6 532 53.8
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 4.0e-150 535.8 525 53.3
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 6.8e-150 535.0 628 48.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.2e-149 534.3 520 55.2
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 5.7e-149 531.9 513 55.2
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 8.3e-148 528.1 514 56.2
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 5.4e-147 525.4 484 56.6
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-146 524.2 492 55.5
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 3.5e-146 522.7 514 54.5
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-145 520.0 502 55.2
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 5.0e-145 518.8 421 61.8
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.5e-145 518.5 501 54.5
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.3e-144 516.2 515 55.5
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 4.2e-144 515.8 483 54.7
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.8e-143 513.1 454 58.4
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-142 510.0 495 54.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 5.7e-141 505.4 471 55.4
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 3.7e-140 502.7 511 51.3
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-137 494.2 493 52.3
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.5e-136 490.7 533 52.7
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.3e-136 489.6 391 63.7
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.0e-133 480.3 490 50.8
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-132 476.9 502 51.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 3.7e-132 476.1 501 50.1
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 5.4e-131 472.2 534 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.7e-129 467.2 562 46.3
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 4.3e-128 462.6 486 51.6
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 3.6e-127 459.5 494 54.3
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.1e-126 458.0 362 64.9
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.2e-124 450.3 500 48.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 8.3e-124 448.4 488 50.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 9.2e-123 444.9 394 58.4
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 2.7e-122 443.4 395 58.7
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-121 441.0 497 50.3
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.5e-120 436.8 440 52.3
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 5.6e-120 435.6 456 53.1
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-119 433.7 493 48.5
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 8.1e-119 431.8 482 50.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.8e-118 430.6 454 53.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 7.1e-107 392.1 459 47.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.6e-106 391.0 340 62.4
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.7e-105 387.5 323 61.3
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 6.6e-105 385.6 642 37.5
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.9e-100 370.2 328 58.5
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.4e-99 367.9 291 64.3
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 2.4e-99 367.1 393 53.4
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 3.2e-99 366.7 331 59.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 4.8e-95 352.8 414 49.5
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.9e-93 345.1 350 50.9
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.8e-92 343.2 343 55.1
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 3.8e-92 343.2 330 57.6
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 3.9e-89 333.2 444 43.9
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 7.6e-85 318.9 247 60.3
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.3e-79 301.6 242 57.4
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 3.4e-77 293.5 604 33.8
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.9e-76 290.4 455 39.3
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.4e-76 288.9 220 58.6
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.4e-76 288.9 279 52.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.4e-62 244.2 348 39.9
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.1e-58 231.1 473 34.2
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 7.9e-58 229.2 181 58.0
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 3.0e-57 227.3 258 50.8
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.9e-57 226.9 166 66.3
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 5.7e-56 223.0 156 66.0
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.5e-53 214.9 147 65.3
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.5e-53 214.9 147 64.6
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 7.7e-53 212.6 144 68.8
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.2e-51 207.2 168 58.3
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 4.8e-47 193.4 162 58.6
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 1.4e-46 191.8 124 73.4
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.7e-41 172.9 196 48.0
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.8e-41 172.6 163 54.6
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 4.5e-37 160.2 188 52.1
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-36 157.9 118 62.7
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-35 155.2 128 57.0
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.7e-32 143.3 204 43.1
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 3.7e-31 140.6 183 39.3
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.1e-30 137.1 139 56.1
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.9e-29 133.3 105 58.1
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.7e-29 132.9 171 42.7
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.3e-19 100.9 76 60.5
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-17 95.9 92 47.8
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 6.6e-12 76.6 73 52.1
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.5e-11 75.5 67 55.2
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.8e-10 71.2 73 52.1
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.2e-08 65.9 53 62.3


User provided reference genes

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