Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 4.4e-200 701.0 348 100.0
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.2e-112 410.6 349 59.6
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.9e-112 408.3 346 59.8
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.3e-110 402.5 318 59.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 9.5e-110 401.0 315 60.0
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.0e-108 396.0 310 61.6
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 5.2e-108 395.2 315 59.4
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 6.8e-108 394.8 314 58.9
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 8.9e-108 394.4 311 58.8
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.9e-108 394.4 311 58.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.2e-107 394.0 313 60.1
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.5e-107 393.7 343 58.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 2.0e-107 393.3 338 58.3
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.6e-107 392.9 318 61.0
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-107 392.1 311 59.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 5.7e-107 391.7 345 58.3
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.9e-106 389.4 311 58.8
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.9e-106 389.4 313 58.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.9e-106 389.4 347 56.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.7e-106 389.0 345 55.7
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 4.9e-106 388.7 318 59.1
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 6.4e-106 388.3 348 56.0
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 8.3e-106 387.9 337 56.1
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.8e-105 386.7 311 57.6
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.2e-105 386.0 310 61.0
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.1e-105 385.6 338 55.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 5.4e-105 385.2 311 58.2
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 7.0e-105 384.8 336 57.7
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.7e-104 382.9 347 56.8
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.7e-104 382.9 342 55.0
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.7e-104 382.9 330 57.0
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 5.9e-104 381.7 338 56.8
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.9e-104 381.7 346 53.8
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 7.8e-104 381.3 347 55.0
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.3e-103 380.6 311 57.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.7e-103 380.2 342 55.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.3e-103 379.8 311 57.6
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.0e-103 379.4 334 55.4
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 2.5e-102 376.3 310 59.0
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.5e-102 376.3 311 57.2
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 7.3e-102 374.8 348 56.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-101 374.0 310 58.4
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.8e-101 372.9 311 55.3
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 4.7e-101 372.1 347 55.9
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.0e-100 370.9 316 56.6
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.0e-100 370.9 361 54.3
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.0e-100 370.9 343 56.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.1e-100 369.4 319 57.7
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.0e-100 369.0 343 53.1
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 5.2e-100 368.6 311 56.6
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 5.2e-100 368.6 311 56.6
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 6.8e-100 368.2 309 57.0
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 6.8e-100 368.2 343 54.5
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 6.8e-100 368.2 343 54.5
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 8.9e-100 367.9 345 55.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.2e-99 367.5 309 55.7
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.2e-99 367.5 286 61.9
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.0e-99 366.7 313 56.5
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-99 366.7 336 53.9
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 3.4e-99 365.9 346 53.8
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.8e-99 365.2 340 53.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.8e-99 365.2 340 53.8
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 9.8e-99 364.4 323 56.0
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.9e-98 362.8 323 55.7
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.9e-98 362.8 323 55.7
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 6.4e-98 361.7 339 53.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.1e-97 360.9 324 55.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-97 359.8 352 51.7
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 5.4e-97 358.6 310 59.0
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 7.0e-97 358.2 402 47.0
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.2e-96 357.5 313 56.9
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.6e-96 357.1 346 54.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.6e-96 357.1 310 56.1
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.0e-96 356.7 325 55.4
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.0e-96 356.7 310 56.5
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.0e-95 354.4 309 55.7
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.3e-95 354.0 349 55.0
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.7e-95 353.6 328 52.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 2.3e-95 353.2 380 49.2
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.3e-95 353.2 341 54.5
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-94 350.9 321 54.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.5e-94 349.7 351 52.7
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.2e-93 347.4 391 47.3
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.6e-93 347.1 302 57.9
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 8.1e-93 344.7 307 54.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.1e-92 344.4 304 55.3
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.3e-90 337.4 345 50.1
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.7e-90 335.9 307 53.4
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.4e-89 333.2 296 54.4
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.6e-88 330.5 314 53.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.6e-88 328.9 314 55.1
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.0e-87 326.2 263 57.8
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 5.1e-87 325.5 314 54.5
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 5.1e-87 325.5 314 52.9
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 5.1e-87 325.5 323 52.9
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 8.6e-87 324.7 275 61.1
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.9e-86 323.6 270 58.9
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-86 323.6 314 53.8
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.6e-85 320.5 341 51.3
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.8e-85 319.7 278 58.6
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 4.7e-85 318.9 313 53.7
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.1e-84 317.8 259 59.8
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.1e-84 316.2 394 47.2
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.0e-84 315.8 319 49.8
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.2e-83 314.3 319 48.9
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.4e-83 312.4 314 52.5
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.1e-81 307.8 333 49.2
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.1e-79 298.9 246 58.9
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.9e-78 297.0 245 60.0
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 9.6e-78 294.7 364 44.8
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.4e-76 290.0 312 47.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 6.8e-76 288.5 231 60.6
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 8.9e-76 288.1 338 46.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 2.6e-75 286.6 214 63.1
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 4.4e-75 285.8 270 54.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.9e-74 283.1 355 47.3
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 8.4e-74 281.6 302 49.3
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.5e-72 276.2 243 53.9
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.3e-70 269.6 288 49.0
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 9.0e-68 261.5 381 40.4
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.4e-65 253.4 309 42.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.2e-65 252.7 301 44.5
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 3.5e-64 249.6 274 47.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.7e-63 247.3 279 48.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.3e-63 246.9 325 41.8
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-60 237.3 246 52.0
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-59 234.2 302 41.7
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.9e-58 229.2 250 47.2
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 3.3e-54 216.5 346 37.0
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 6.2e-53 212.2 262 41.2
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.1e-49 201.4 253 41.1
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.5e-48 196.4 160 57.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 3.5e-48 196.4 146 61.6
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.0e-47 194.9 333 37.5
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-44 184.9 211 43.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.2e-42 177.2 307 37.1
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 2.9e-42 176.8 243 42.0
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.1e-40 170.6 138 56.5
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.8e-39 167.5 231 41.6
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 8.2e-37 158.7 164 49.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.0e-34 151.8 113 65.5
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.2e-34 150.6 267 34.5
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 2.7e-32 143.7 94 69.1
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.4e-31 141.4 264 34.1
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.2e-29 134.0 256 31.2
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.3e-26 124.8 219 34.7
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.8e-26 123.2 395 27.3
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.9e-24 115.5 307 28.3
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.6e-22 110.5 307 30.9
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 4.4e-22 109.8 109 43.1
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 4.8e-21 106.3 109 43.1
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-20 105.1 84 60.7
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-19 101.3 155 38.1
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 5.9e-19 99.4 67 65.7
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 5.9e-19 99.4 67 65.7
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.0e-18 98.6 292 27.4
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.0e-18 98.6 212 31.6
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.3e-18 98.2 67 64.2
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 5.5e-17 92.8 60 71.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 7.2e-17 92.4 307 27.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 5.3e-12 76.3 80 50.0
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 8.5e-10 68.9 105 40.0
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 1.9e-09 67.8 107 40.2


User provided reference genes

Program Settings