Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003126 Vanilla planifolia HOM05D003949 ORTHO05D004504 2.1e-100 369.0 186 100.0
MBI06_g32174_MAGBIO Magnolia biondii HOM05D003949 ORTHO05D004504 1.5e-50 203.4 159 67.9
Os07g0258700 Oryza sativa ssp. japonica HOM05D003949 ORTHO05D004504 5.0e-49 198.4 154 67.5
PSO170G4419 Papaver somniferum HOM05D003949 ORTHO05D004504 1.1e-45 187.2 153 65.4
PSO528G0283 Papaver somniferum HOM05D003949 ORTHO05D004504 1.5e-45 186.8 153 65.4
Nn1g08941 Nelumbo nucifera HOM05D003949 ORTHO05D004504 2.0e-45 186.4 162 63.0
Potri.005G183600 Populus trichocarpa HOM05D003949 ORTHO05D004504 1.3e-44 183.7 157 66.2
Cfa018416 Carpinus fangiana HOM05D003949 ORTHO05D004504 1.7e-44 183.3 165 62.4
Sp6g09480 Schrenkiella parvula HOM05D003949 ORTHO05D004504 1.7e-44 183.3 148 67.6
BcaB01g02864 Brassica carinata HOM05D003949 ORTHO05D004504 2.8e-44 182.6 148 67.6
BcaC01g04773 Brassica carinata HOM05D003949 ORTHO05D004504 2.8e-44 182.6 148 66.2
BolC3t15703H Brassica oleracea HOM05D003949 ORTHO05D004504 2.8e-44 182.6 148 66.2
QL09p032138 Quercus lobata HOM05D003949 ORTHO05D004504 3.7e-44 182.2 155 65.8
AL6G42240 Arabidopsis lyrata HOM05D003949 ORTHO05D004504 1.1e-43 180.6 149 67.1
Thhalv10028837m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 1.1e-43 180.6 148 66.2
A03p28040 Brassica napus HOM05D003949 ORTHO05D004504 1.4e-43 180.3 149 66.4
BraA03t12017Z Brassica rapa HOM05D003949 ORTHO05D004504 1.4e-43 180.3 149 66.4
Lj4A674G53 Lonicera japonica HOM05D003949 ORTHO05D004504 1.4e-43 180.3 170 60.6
QL09p031595 Quercus lobata HOM05D003949 ORTHO05D004504 1.8e-43 179.9 155 65.2
QL09p032129 Quercus lobata HOM05D003949 ORTHO05D004504 1.8e-43 179.9 155 65.2
Potri.002G077000 Populus trichocarpa HOM05D003949 ORTHO05D004504 2.4e-43 179.5 168 61.9
MELO3C015709.2 Cucumis melo HOM05D003949 ORTHO05D004504 3.1e-43 179.1 167 61.1
CsaV3_7G022150 Cucumis sativus L. HOM05D003949 ORTHO05D004504 5.3e-43 178.3 167 61.1
Prupe.1G487700 Prunus persica HOM05D003949 ORTHO05D004504 5.3e-43 178.3 150 67.3
Haze_17645 Corylus avellana HOM05D003949 ORTHO05D004504 7.0e-43 177.9 166 61.4
ClCG09G021850 Citrullus lanatus HOM05D003949 ORTHO05D004504 9.1e-43 177.6 167 60.5
Sed0004108 Sechium edule HOM05D003949 ORTHO05D004504 9.1e-43 177.6 167 59.9
C03p33900 Brassica napus HOM05D003949 ORTHO05D004504 1.2e-42 177.2 145 66.2
Carub.0006s2698 Capsella rubella HOM05D003949 ORTHO05D004504 1.2e-42 177.2 150 64.7
Sed0003495 Sechium edule HOM05D003949 ORTHO05D004504 1.6e-42 176.8 167 59.9
Ciclev10002113m.g Citrus clementina HOM05D003949 ORTHO05D004504 2.0e-42 176.4 159 64.8
AT4G08455 Arabidopsis thaliana HOM05D003949 ORTHO05D004504 2.6e-42 176.0 149 65.1
Duzib041G0733 Durio zibethinus HOM05D003949 ORTHO05D004504 2.6e-42 176.0 167 61.1
Lalb_Chr11g0066221 Lupinus albus HOM05D003949 ORTHO05D004504 2.6e-42 176.0 161 60.2
vmacro00872 Vaccinium macrocarpon HOM05D003949 ORTHO05D004504 2.6e-42 176.0 149 65.8
Cpa.g.sc64.155 Carica papaya HOM05D003949 ORTHO05D004504 3.5e-42 175.6 150 62.7
Sc15g0007490 Simmondsia chinensis HOM05D003949 ORTHO05D004504 3.5e-42 175.6 155 61.9
Dinv27260 Davidia involucrata HOM05D003949 ORTHO05D004504 5.9e-42 174.9 167 59.9
EL10Ac1g01369 Beta vulgaris HOM05D003949 ORTHO05D004504 7.7e-42 174.5 153 64.7
CARHR259500 Cardamine hirsuta HOM05D003949 ORTHO05D004504 7.7e-42 174.5 148 64.2
THA.LOC104808256 Tarenaya hassleriana HOM05D003949 ORTHO05D004504 1.0e-41 174.1 159 63.5
Aqoxy117s002 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 1.7e-41 173.3 158 62.0
Aqoxy3G01750 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 1.7e-41 173.3 158 62.0
SGA_v2.0_scaffold28G11965 Striga asiatica HOM05D003949 ORTHO05D004504 1.7e-41 173.3 182 57.1
TWI32G1346 Tripterygium wilfordii HOM05D003949 ORTHO05D004504 2.2e-41 172.9 162 61.1
Duzib093G1312 Durio zibethinus HOM05D003949 ORTHO05D004504 2.9e-41 172.6 167 60.5
Psat5g084280 Pisum sativum HOM05D003949 ORTHO05D004504 2.9e-41 172.6 148 63.5
CSS0001496 Camellia sinensis var. sinensis HOM05D003949 ORTHO05D004504 3.8e-41 172.2 154 63.6
COL.COLO4_36870 Corchorus olitorius HOM05D003949 ORTHO05D004504 3.8e-41 172.2 155 64.5
Actinidia29493 Actinidia chinensis HOM05D003949 ORTHO05D004504 5.0e-41 171.8 157 61.8
Thecc.08G134300 Theobroma cacao HOM05D003949 ORTHO05D004504 5.0e-41 171.8 155 64.5
Gohir.D05G271200 Gossypium hirsutum HOM05D003949 ORTHO05D004504 6.5e-41 171.4 168 58.3
Gorai.009G284100 Gossypium raimondii HOM05D003949 ORTHO05D004504 6.5e-41 171.4 168 58.3
Manes.18G083500 Manihot esculenta HOM05D003949 ORTHO05D004504 6.5e-41 171.4 154 64.3
Ah.05g169030 Amaranthus hybridus HOM05D003949 ORTHO05D004504 8.5e-41 171.0 154 61.7
Atru.chr13.1594 Acer truncatum HOM05D003949 ORTHO05D004504 1.1e-40 170.6 162 60.5
Migut.N03257 Erythranthe guttata HOM05D003949 ORTHO05D004504 1.1e-40 170.6 164 57.3
Hma1.2p1_1732F.1_g299770 Hydrangea macrophylla HOM05D003949 ORTHO05D004504 1.1e-40 170.6 160 61.9
Rhsim11G0072500 Rhododendron simsii HOM05D003949 ORTHO05D004504 1.1e-40 170.6 165 60.6
MSTRG.1405 Avicennia marina HOM05D003949 ORTHO05D004504 1.5e-40 170.2 164 58.5
Gohir.A05G269300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 1.5e-40 170.2 168 57.7
FvH4_2g28021 Fragaria vesca HOM05D003949 ORTHO05D004504 2.5e-40 169.5 151 62.9
FAN20G1921 Fragaria x ananassa HOM05D003949 ORTHO05D004504 2.5e-40 169.5 151 62.9
FAN24G2840 Fragaria x ananassa HOM05D003949 ORTHO05D004504 2.5e-40 169.5 151 62.9
GSVIVG01008796001 Vitis vinifera HOM05D003949 ORTHO05D004504 2.5e-40 169.5 150 64.7
AUR62007697 Chenopodium quinoa HOM05D003949 ORTHO05D004504 3.2e-40 169.1 159 62.3
MD15G1132500 Malus domestica HOM05D003949 ORTHO05D004504 4.2e-40 168.7 150 64.0
Aa31LG9G14160 Aethionema arabicum HOM05D003949 ORTHO05D004504 5.5e-40 168.3 155 58.7
FAN15G0925 Fragaria x ananassa HOM05D003949 ORTHO05D004504 5.5e-40 168.3 151 62.9
FAN15G2352 Fragaria x ananassa HOM05D003949 ORTHO05D004504 5.5e-40 168.3 151 62.9
FAN27G1067 Fragaria x ananassa HOM05D003949 ORTHO05D004504 9.4e-40 167.5 151 61.6
CAN.G215.13 Capsicum annuum HOM05D003949 ORTHO05D004504 1.2e-39 167.2 159 62.3
Cc10_g13590 Coffea canephora HOM05D003949 ORTHO05D004504 1.2e-39 167.2 152 61.8
TWI34G1744 Tripterygium wilfordii HOM05D003949 ORTHO05D004504 2.1e-39 166.4 151 60.3
CANSAT56G1102 Cannabis sativa HOM05D003949 ORTHO05D004504 4.7e-39 165.2 156 57.7
CDE02G1310 Ceratophyllum demersum HOM05D003949 ORTHO05D004504 4.7e-39 165.2 170 51.8
Actinidia33635 Actinidia chinensis HOM05D003949 ORTHO05D004504 6.1e-39 164.9 162 56.8
Dinv14706 Davidia involucrata HOM05D003949 ORTHO05D004504 8.0e-39 164.5 155 61.3
Lsat_1_v5_gn_1_7940 Lactuca sativa HOM05D003949 ORTHO05D004504 8.0e-39 164.5 158 58.9
Nitab4.5_0000005g0360 Nicotiana tabacum HOM05D003949 ORTHO05D004504 8.0e-39 164.5 167 58.1
Nitab4.5_0000389g0100 Nicotiana tabacum HOM05D003949 ORTHO05D004504 8.0e-39 164.5 167 58.1
VMungo1309G1661 Vigna mungo HOM05D003949 ORTHO05D004504 8.0e-39 164.5 148 60.1
Medtr3g088660 Medicago truncatula HOM05D003949 ORTHO05D004504 1.0e-38 164.1 148 60.8
ATR1001G004 Amborella trichopoda HOM05D003949 ORTHO05D004504 1.4e-38 163.7 169 53.3
CiPaw.16G022200 Carya illinoinensis HOM05D003949 ORTHO05D004504 1.4e-38 163.7 146 61.6
Ca_16616_v3 Cicer arietinum L. HOM05D003949 ORTHO05D004504 1.4e-38 163.7 170 57.1
DCAR_003593 Daucus carota HOM05D003949 ORTHO05D004504 1.8e-38 163.3 151 61.6
Actinidia03427 Actinidia chinensis HOM05D003949 ORTHO05D004504 4.0e-38 162.2 160 56.9
PGR042G2128 Punica granatum HOM05D003949 ORTHO05D004504 4.0e-38 162.2 157 56.7
Eucgr.E00988 Eucalyptus grandis HOM05D003949 ORTHO05D004504 5.2e-38 161.8 157 58.6
Peaxi162Scf00565g00310 Petunia axillaris HOM05D003949 ORTHO05D004504 5.2e-38 161.8 168 57.1
Sopen02g010800 Solanum pennellii HOM05D003949 ORTHO05D004504 5.2e-38 161.8 184 54.3
Sabra02G0060500 Salix brachista HOM05D003949 ORTHO05D004504 1.5e-37 160.2 148 60.8
unitig_749.g13929 Utricularia gibba HOM05D003949 ORTHO05D004504 1.5e-37 160.2 159 57.2
Eucgr.E00983 Eucalyptus grandis HOM05D003949 ORTHO05D004504 2.0e-37 159.8 162 56.8
Glyma.06G118200 Glycine max HOM05D003949 ORTHO05D004504 2.0e-37 159.8 148 56.8
Solyc02g032510.3 Solanum lycopersicum HOM05D003949 ORTHO05D004504 3.3e-37 159.1 174 55.7
Phvul.009G130700 Phaseolus vulgaris HOM05D003949 ORTHO05D004504 4.4e-37 158.7 148 59.5
HanXRQChr02g0045541 Helianthus annuus HOM05D003949 ORTHO05D004504 1.3e-36 157.1 153 59.5
Migut.C01075 Erythranthe guttata HOM05D003949 ORTHO05D004504 1.7e-36 156.8 162 55.6
unitig_26.g9909 Utricularia gibba HOM05D003949 ORTHO05D004504 2.2e-36 156.4 156 57.7
Glyma.04G244900 Glycine max HOM05D003949 ORTHO05D004504 4.8e-36 155.2 148 55.4
Lj1g0017464 Lotus japonicus HOM05D003949 ORTHO05D004504 4.8e-36 155.2 152 58.6
ECA248G3438 Erigeron canadensis HOM05D003949 ORTHO05D004504 8.3e-36 154.5 159 56.0
SEGI_15749 Sequoiadendron giganteum HOM05D003949 ORTHO05D004504 9.1e-35 151.0 167 54.5
CiPaw.15G030200 Carya illinoinensis HOM05D003949 ORTHO05D004504 5.5e-32 141.7 155 54.2
TPR.G6334 Trifolium pratense HOM05D003949 ORTHO05D004504 7.2e-32 141.4 125 63.2
Actinidia28678 Actinidia chinensis HOM05D003949 ORTHO05D004504 5.2e-30 135.2 138 57.2
Thhalv10016014m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 2.0e-29 133.3 141 53.9
Gohir.A02G070300 Gossypium hirsutum HOM05D003949 ORTHO05D004504 9.8e-29 131.0 159 50.3
Prupe.1G488200 Prunus persica HOM05D003949 ORTHO05D004504 2.2e-28 129.8 148 51.4
Eucgr.E00992 Eucalyptus grandis HOM05D003949 ORTHO05D004504 4.8e-28 128.6 146 52.1
Thhalv10029206m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 8.3e-28 127.9 148 50.0
Prupe.1G488000 Prunus persica HOM05D003949 ORTHO05D004504 1.4e-27 127.1 149 51.7
Eucgr.E00993 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.6e-26 123.6 146 50.0
Sabra05G0139000 Salix brachista HOM05D003949 ORTHO05D004504 1.6e-26 123.6 157 51.0
Prupe.1G488300 Prunus persica HOM05D003949 ORTHO05D004504 1.3e-25 120.6 153 49.7
Prupe.1G488100 Prunus persica HOM05D003949 ORTHO05D004504 2.9e-25 119.4 148 48.6
Eucgr.E00994 Eucalyptus grandis HOM05D003949 ORTHO05D004504 5.0e-25 118.6 141 51.8
PGR042G1779 Punica granatum HOM05D003949 ORTHO05D004504 1.1e-24 117.5 156 43.6
Prupe.1G488400 Prunus persica HOM05D003949 ORTHO05D004504 3.3e-24 115.9 151 50.3
Thhalv10023183m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 4.2e-24 115.5 150 44.7
Eucgr.L00420 Eucalyptus grandis HOM05D003949 ORTHO05D004504 7.2e-24 114.8 146 48.6
MD15G1132600 Malus domestica HOM05D003949 ORTHO05D004504 1.6e-23 113.6 163 45.4
Actinidia33356 Actinidia chinensis HOM05D003949 ORTHO05D004504 2.8e-23 112.8 162 43.2
Sp6g09470 Schrenkiella parvula HOM05D003949 ORTHO05D004504 3.4e-21 105.9 128 48.4
Thhalv10024159m.g Eutrema salsugineum HOM05D003949 ORTHO05D004504 7.5e-21 104.8 139 43.2
Prupe.1G487900 Prunus persica HOM05D003949 ORTHO05D004504 1.1e-19 100.9 148 39.9
Duzib116G0071 Durio zibethinus HOM05D003949 ORTHO05D004504 1.4e-19 100.5 143 44.1
Zm00001eb304620 Zea mays HOM05D003949 ORTHO05D004504 2.4e-19 99.8 97 54.6
AUR62013445 Chenopodium quinoa HOM05D003949 ORTHO05D004504 1.3e-17 94.0 63 74.6
Gohir.D02G077400 Gossypium hirsutum HOM05D003949 ORTHO05D004504 1.3e-17 94.0 94 59.6
Lj4C664T3 Lonicera japonica HOM05D003949 ORTHO05D004504 1.7e-17 93.6 91 58.2
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 6.6e-17 91.7 101 52.5
Oeu047169.1 Olea europaea HOM05D003949 ORTHO05D004504 8.6e-17 91.3 80 61.2
Actinidia04780 Actinidia chinensis HOM05D003949 ORTHO05D004504 1.1e-16 90.9 63 73.0
Prupe.2G186000 Prunus persica HOM05D003949 ORTHO05D004504 5.6e-16 88.6 151 42.4
Oeu047168.1 Olea europaea HOM05D003949 ORTHO05D004504 2.1e-15 86.7 101 53.5
RcHm_v2.0_Chr6g0296891 Rosa chinensis HOM05D003949 ORTHO05D004504 2.1e-15 86.7 92 54.3
Prupe.1G487800 Prunus persica HOM05D003949 ORTHO05D004504 3.6e-15 85.9 112 45.5
Prupe.2G185900 Prunus persica HOM05D003949 ORTHO05D004504 8.0e-15 84.7 150 42.0
QL09p031603 Quercus lobata HOM05D003949 ORTHO05D004504 1.8e-14 83.6 91 54.9
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 6.8e-14 81.6 86 55.8
Eucgr.L00413 Eucalyptus grandis HOM05D003949 ORTHO05D004504 7.5e-13 78.2 55 72.7
Lj4C664T4 Lonicera japonica HOM05D003949 ORTHO05D004504 1.7e-12 77.0 72 58.3
Eucgr.E00996 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.2e-10 70.9 163 31.3
Gorai.005G086900 Gossypium raimondii HOM05D003949 ORTHO05D004504 6.0e-10 68.6 94 47.9
Eucgr.E00984 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.3e-09 67.4 66 57.6
MD15G1132800 Malus domestica HOM05D003949 ORTHO05D004504 1.3e-09 67.4 56 62.5
Mapoly0124s0031 Marchantia polymorpha HOM05D003949 ORTHO05D004504 3.0e-09 66.2 116 40.5
Sc11g0005660 Simmondsia chinensis HOM05D002006 ORTHO05D002128 6.6e-09 65.1 127 32.3
AagrBONN_evm.TU.Sc2ySwM_344.1212 Anthoceros agrestis HOM05D002322 ORTHO05D002536 1.1e-08 64.3 93 43.0
Mapoly0019s0159 Marchantia polymorpha HOM05D002006 ORTHO05D002128 1.5e-08 63.9 82 45.1
Eucgr.E00985 Eucalyptus grandis HOM05D003949 ORTHO05D004504 2.5e-08 63.2 56 62.5
AagrBONN_evm.TU.Sc2ySwM_368.150 Anthoceros agrestis HOM05D003949 ORTHO05D018327 3.3e-08 62.8 162 30.9
Mapoly0013s0077 Marchantia polymorpha HOM05D002322 ORTHO05D002536 1.6e-07 60.5 151 27.2
AagrBONN_evm.TU.Sc2ySwM_117.3648 Anthoceros agrestis HOM05D002322 ORTHO05D018327 2.8e-07 59.7 137 36.5
SMO358G0171 Selaginella moellendorffii HOM05D002322 ORTHO05D002536 2.8e-07 59.7 154 31.8
AagrBONN_evm.TU.Sc2ySwM_368.153 Anthoceros agrestis HOM05D003949 ORTHO05D018327 3.6e-07 59.3 101 41.6
AUR62012337 Chenopodium quinoa HOM05D002006 ORTHO05D002128 4.7e-07 58.9 127 31.5
Mapoly0021s0088 Marchantia polymorpha HOM05D003949 ORTHO05D004504 4.7e-07 58.9 153 28.8
SMO174G0126 Selaginella moellendorffii HOM05D003949 ORTHO05D004504 4.7e-07 58.9 64 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3649 Anthoceros agrestis HOM05D002322 ORTHO05D018327 6.2e-07 58.5 72 41.7
TWI53G1315 Tripterygium wilfordii HOM05D002006 ORTHO05D002128 1.1e-06 57.8 128 32.0
Eucgr.A00657 Eucalyptus grandis HOM05D003949 ORTHO05D004504 1.4e-06 57.4 55 56.4
EL10Ac2g04288 Beta vulgaris HOM05D002006 ORTHO05D002128 1.8e-06 57.0 127 30.7
Thecc.10G172400 Theobroma cacao HOM05D002006 ORTHO05D002128 1.8e-06 57.0 139 30.9
Pp3c6_17350 Physcomitrium patens HOM05D002322 ORTHO05D002536 2.3e-06 56.6 151 34.4
AUR62022981 Chenopodium quinoa HOM05D002006 ORTHO05D002128 3.1e-06 56.2 120 31.7
BcaB06g28475 Brassica carinata HOM05D002006 ORTHO05D002128 6.8e-06 55.1 112 35.7
CANSAT11G2409 Cannabis sativa HOM05D002322 ORTHO05D002536 6.8e-06 55.1 90 37.8
Mapoly0054s0092 Marchantia polymorpha HOM05D003949 ORTHO05D004504 6.8e-06 55.1 119 32.8
Pp3c5_8700 Physcomitrium patens HOM05D002322 ORTHO05D002536 6.8e-06 55.1 151 33.8
ATR1127G055 Amborella trichopoda HOM05D002006 ORTHO05D002128 8.9e-06 54.7 124 31.5
ECA238G3018 Erigeron canadensis HOM05D002006 ORTHO05D002128 8.9e-06 54.7 127 28.3
Mapoly0064s0008 Marchantia polymorpha HOM05D003949 ORTHO05D004504 8.9e-06 54.7 144 31.2


User provided reference genes

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