Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 0.0e+00 1172.1 586 100.0
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 1.9e-235 819.3 518 79.0
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 1.5e-232 809.7 590 69.7
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.9e-232 809.3 516 77.1
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.5e-232 808.9 585 70.6
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 9.6e-232 807.0 543 73.8
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 3.7e-231 805.1 585 70.3
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 6.3e-231 804.3 517 77.0
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 6.3e-231 804.3 522 76.2
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 8.2e-231 803.9 586 70.5
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 2.4e-230 802.4 527 75.0
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 4.1e-230 801.6 527 76.3
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 5.3e-230 801.2 518 76.3
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 5.3e-230 801.2 524 76.1
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 6.9e-230 800.8 518 76.3
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 9.0e-230 800.4 521 76.2
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 2.6e-229 798.9 527 75.3
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 5.9e-229 797.7 550 73.5
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 7.6e-229 797.3 537 74.7
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 1.7e-228 796.2 527 75.9
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 2.9e-228 795.4 589 69.6
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 2.9e-228 795.4 589 68.6
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 3.8e-228 795.0 521 75.6
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 2.5e-227 792.3 520 75.2
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 4.2e-227 791.6 512 76.8
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 5.5e-227 791.2 546 72.7
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 7.2e-227 790.8 518 75.9
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 2.7e-226 788.9 527 74.0
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 4.6e-226 788.1 521 74.7
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 6.1e-226 787.7 546 72.2
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 7.9e-226 787.3 522 73.9
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 2.3e-225 785.8 522 75.3
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 2.3e-225 785.8 532 73.7
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 3.0e-225 785.4 525 73.7
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 3.9e-225 785.0 520 74.4
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 5.1e-225 784.6 526 73.6
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 1.1e-224 783.5 521 74.9
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 1.1e-224 783.5 522 73.8
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.5e-224 783.1 528 74.6
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.5e-224 783.1 548 72.3
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.9e-224 782.7 592 68.2
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 4.3e-224 781.6 586 68.9
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 1.3e-223 780.0 518 74.9
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 1.3e-223 780.0 522 73.2
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 1.6e-223 779.6 522 74.1
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.6e-223 779.6 523 73.2
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 6.3e-223 777.7 521 74.3
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 6.3e-223 777.7 587 68.3
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.4e-222 776.5 522 73.4
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.1e-222 775.4 520 74.6
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 3.1e-222 775.4 553 71.1
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 5.3e-222 774.6 566 70.0
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 6.9e-222 774.2 522 73.4
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 9.0e-222 773.9 567 70.4
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 9.0e-222 773.9 517 74.7
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 1.2e-221 773.5 517 74.7
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 1.2e-221 773.5 522 73.9
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.5e-221 773.1 522 74.1
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 2.0e-221 772.7 525 72.4
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 2.6e-221 772.3 522 74.3
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 5.9e-221 771.2 553 70.5
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 7.7e-221 770.8 518 73.9
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 1.3e-220 770.0 522 73.0
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.3e-220 770.0 522 73.0
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 1.3e-220 770.0 522 73.8
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 2.9e-220 768.8 543 70.7
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 3.8e-220 768.5 520 74.6
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 8.5e-220 767.3 523 72.7
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 8.5e-220 767.3 523 72.7
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 2.5e-219 765.8 555 69.7
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 3.2e-219 765.4 549 70.3
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.5e-219 764.6 522 72.6
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 2.7e-218 762.3 523 72.3
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 2.7e-218 762.3 523 72.3
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.7e-218 762.3 521 72.4
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 3.6e-218 761.9 523 72.1
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 4.4e-216 755.0 524 71.8
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.4e-216 755.0 553 68.7
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 5.7e-216 754.6 505 74.9
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.1e-214 750.4 512 72.9
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 7.7e-213 744.2 560 68.0
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.0e-212 743.8 600 66.2
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.6e-210 736.5 516 71.3
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.9e-209 731.9 556 67.6
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.7e-207 726.5 538 69.9
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 8.2e-207 724.2 525 70.7
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.7e-204 716.5 522 68.8
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 8.5e-204 714.1 520 71.0
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 3.0e-201 705.7 461 74.0
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 6.5e-196 688.0 521 68.5
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 2.5e-195 686.0 519 67.4
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 4.2e-195 685.3 522 66.7
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 7.2e-195 684.5 518 69.9
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 4.7e-194 681.8 442 75.8
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 4.7e-194 681.8 515 68.3
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 4.4e-192 675.2 457 72.6
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 3.7e-191 672.2 517 66.9
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 4.5e-189 665.2 520 66.5
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 2.5e-187 659.4 508 66.3
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.8e-183 646.0 516 65.5
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.7e-180 636.7 501 64.5
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 6.6e-180 634.8 560 61.6
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.6e-178 630.2 452 71.0
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 4.7e-178 628.6 506 66.4
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 2.4e-174 616.3 422 73.5
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 7.8e-173 611.3 521 63.0
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.6e-165 587.0 506 62.1
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 4.3e-163 578.9 397 73.0
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 9.5e-155 551.2 445 63.6
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 1.6e-138 497.3 389 67.9
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 6.9e-113 412.1 322 63.0
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-84 317.8 253 64.0
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 7.2e-78 295.8 200 71.0
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-63 245.7 274 48.5
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-55 221.5 201 55.2
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.0e-48 196.4 141 68.8
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 5.6e-46 189.9 143 65.7
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.7e-37 160.2 99 72.7
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 4.0e-36 157.1 99 72.7
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 7.1e-33 146.4 112 61.6
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 1.9e-25 121.7 78 75.6
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.2e-24 119.0 66 80.3
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 2.8e-21 107.8 180 39.4
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.4e-20 105.5 72 68.1
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 5.3e-20 103.6 67 70.1
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 4.5e-19 100.5 124 46.0
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 4.5e-19 100.5 124 46.0
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 3.2e-17 94.4 127 43.3
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 3.2e-17 94.4 127 43.3
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.8e-15 88.6 67 62.7
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.4e-12 79.0 53 71.7
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 1.6e-08 65.5 74 48.6
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.5e-06 58.9 38 73.7


User provided reference genes

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