Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003078 Vanilla planifolia HOM05D001950 ORTHO05D001926 6.5e-177 624.0 328 100.0
TAR622G1364 Trochodendron aralioides HOM05D001950 ORTHO05D001926 1.4e-67 260.8 419 44.4
Os05g0100900 Oryza sativa ssp. japonica HOM05D001950 ORTHO05D001926 1.8e-62 243.8 444 40.3
Zm00001eb267700 Zea mays HOM05D001950 ORTHO05D001926 3.1e-62 243.0 430 39.5
TAR374G1079 Trochodendron aralioides HOM05D001950 ORTHO05D001926 2.2e-60 236.9 382 43.7
MBI19_g25008_MAGBIO Magnolia biondii HOM05D001950 ORTHO05D001926 1.1e-59 234.6 436 41.1
MBI10_g10240_MAGBIO Magnolia biondii HOM05D001950 ORTHO05D001926 2.7e-58 229.9 450 40.2
Actinidia20628 Actinidia chinensis HOM05D001950 ORTHO05D001926 1.3e-55 221.1 450 37.8
Os01g0108000 Oryza sativa ssp. japonica HOM05D001950 ORTHO05D001926 1.3e-55 221.1 440 36.6
Dinv26645 Davidia involucrata HOM05D001950 ORTHO05D001926 6.3e-55 218.8 432 38.4
Ciclev10026951m.g Citrus clementina HOM05D001950 ORTHO05D001926 1.8e-54 217.2 452 37.6
PSO017G5002 Papaver somniferum HOM05D001950 ORTHO05D001926 1.8e-54 217.2 443 37.2
Aqoxy3G01024 Aquilegia oxysepala HOM05D001950 ORTHO05D001926 4.1e-54 216.1 455 37.6
PSO478G4401 Papaver somniferum HOM05D001950 ORTHO05D001926 5.3e-54 215.7 424 38.2
CiPaw.15G186400 Carya illinoinensis HOM05D001950 ORTHO05D001926 1.2e-53 214.5 416 38.5
Aqoxy1G01787 Aquilegia oxysepala HOM05D001950 ORTHO05D001926 1.5e-53 214.2 455 37.4
RcHm_v2.0_Chr3g0485101 Rosa chinensis HOM05D001950 ORTHO05D001926 1.0e-52 211.5 455 35.8
VMungo0720G2092 Vigna mungo HOM05D001950 ORTHO05D001926 1.7e-52 210.7 413 38.7
Actinidia04073 Actinidia chinensis HOM05D001950 ORTHO05D001926 2.2e-52 210.3 447 36.9
Cfa020944 Carpinus fangiana HOM05D001950 ORTHO05D004648 2.9e-52 209.9 446 37.2
Haze_19380 Corylus avellana HOM05D001950 ORTHO05D001926 6.5e-52 208.8 383 40.2
Dinv03274 Davidia involucrata HOM05D001950 ORTHO05D001926 6.5e-52 208.8 454 35.7
Nn3g16882 Nelumbo nucifera HOM05D001950 ORTHO05D001926 1.4e-51 207.6 369 39.8
TWI31G1159 Tripterygium wilfordii HOM05D001950 ORTHO05D001926 3.2e-51 206.5 447 35.8
Manes.01G184200 Manihot esculenta HOM05D001950 ORTHO05D001926 4.2e-51 206.1 396 39.1
Glyma.10G175300 Glycine max HOM05D001950 ORTHO05D001926 7.2e-51 205.3 388 39.9
FvH4_1g25960 Fragaria vesca HOM05D001950 ORTHO05D001926 9.4e-51 204.9 455 35.4
Glyma.20G215200 Glycine max HOM05D001950 ORTHO05D001926 9.4e-51 204.9 414 38.6
FAN19G2528 Fragaria x ananassa HOM05D001950 ORTHO05D001926 2.1e-50 203.8 406 38.2
FAN26G2371 Fragaria x ananassa HOM05D001950 ORTHO05D001926 3.6e-50 203.0 406 37.4
FAN28G2362 Fragaria x ananassa HOM05D001950 ORTHO05D001926 6.1e-50 202.2 455 34.7
GSVIVG01000268001 Vitis vinifera HOM05D001950 ORTHO05D001926 1.4e-49 201.1 430 37.0
FAN23G2366 Fragaria x ananassa HOM05D001950 ORTHO05D001926 1.8e-49 200.7 384 38.5
Sopen02g014110 Solanum pennellii HOM05D001950 ORTHO05D001926 1.8e-49 200.7 444 36.5
Medtr1g077190 Medicago truncatula HOM05D001950 ORTHO05D001926 1.5e-48 197.6 307 46.3
Lalb_Chr21g0311741 Lupinus albus HOM05D001950 ORTHO05D001926 2.0e-48 197.2 308 45.8
Phvul.L001768 Phaseolus vulgaris HOM05D001950 ORTHO05D001926 3.3e-48 196.4 412 37.1
Manes.02G143700 Manihot esculenta HOM05D001950 ORTHO05D001926 4.4e-48 196.1 452 36.1
Psat6g111560 Pisum sativum HOM05D001950 ORTHO05D001926 7.4e-48 195.3 307 46.3
Lalb_Chr02g0149731 Lupinus albus HOM05D001950 ORTHO05D001926 1.7e-47 194.1 391 38.1
Nn4g22788 Nelumbo nucifera HOM05D001950 ORTHO05D001926 2.8e-47 193.4 422 36.7
Atru.chr4.16 Acer truncatum HOM05D001950 ORTHO05D001926 1.1e-46 191.4 432 37.5
Eucgr.I00037 Eucalyptus grandis HOM05D001950 ORTHO05D001926 1.1e-46 191.4 453 36.6
MELO3C023214.2 Cucumis melo HOM05D001950 ORTHO05D001926 1.4e-46 191.0 383 38.9
CsaV3_2G019590 Cucumis sativus L. HOM05D001950 ORTHO05D001926 1.4e-46 191.0 383 38.9
Peaxi162Scf00742g00028 Petunia axillaris HOM05D001950 ORTHO05D001926 2.4e-46 190.3 286 46.2
COL.COLO4_12142 Corchorus olitorius HOM05D001950 ORTHO05D001926 3.5e-45 186.4 418 36.8
arahy.Tifrunner.gnm1.ann1.462L4D Arachis hypogaea HOM05D001950 ORTHO05D001926 1.0e-44 184.9 323 42.7
CANSAT01G2489 Cannabis sativa HOM05D001950 ORTHO05D001926 2.9e-44 183.3 453 34.2
arahy.Tifrunner.gnm1.ann1.TM4GPH Arachis hypogaea HOM05D001950 ORTHO05D001926 4.2e-43 179.5 322 42.2
Prupe.4G288600 Prunus persica HOM05D001950 ORTHO05D001926 5.5e-43 179.1 354 37.0
Solyc02g063050.3 Solanum lycopersicum HOM05D001950 ORTHO05D001926 9.4e-43 178.3 348 38.2
PGR119G1463 Punica granatum HOM05D001950 ORTHO05D001926 1.2e-42 177.9 383 36.8
Lj5g0015643 Lotus japonicus HOM05D001950 ORTHO05D001926 2.7e-42 176.8 350 40.0
Sc09g0002010 Simmondsia chinensis HOM05D001950 ORTHO05D001926 4.7e-42 176.0 307 43.3
Hund21775 Selenicereus undatus HOM05D001950 ORTHO05D001926 6.1e-42 175.6 425 35.3
QL10p035251 Quercus lobata HOM05D001950 ORTHO05D001926 8.0e-42 175.3 320 42.5
Cc00_g01310 Coffea canephora HOM05D001950 ORTHO05D001926 1.0e-41 174.9 388 36.9
Thecc.01G144300 Theobroma cacao HOM05D001950 ORTHO05D001926 2.3e-41 173.7 419 35.3
Duzib147G0542 Durio zibethinus HOM05D001950 ORTHO05D001926 8.8e-41 171.8 401 36.2
Rhsim07G0224400 Rhododendron simsii HOM05D001950 ORTHO05D001926 1.2e-40 171.4 424 34.2
THA.LOC104818394 Tarenaya hassleriana HOM05D001950 ORTHO05D001926 1.2e-40 171.4 330 40.6
Gorai.012G047900 Gossypium raimondii HOM05D001950 ORTHO05D001926 1.5e-40 171.0 365 37.8
QL10p037046 Quercus lobata HOM05D001950 ORTHO05D001926 1.5e-40 171.0 325 42.5
Gohir.A05G373100 Gossypium hirsutum HOM05D001950 ORTHO05D001926 2.0e-40 170.6 366 38.3
Oeu034408.5 Olea europaea HOM05D001950 ORTHO05D001926 2.0e-40 170.6 342 35.4
vmacro08685 Vaccinium macrocarpon HOM05D001950 ORTHO05D001926 2.0e-40 170.6 216 49.1
Duzib264G1221 Durio zibethinus HOM05D001950 ORTHO05D001926 2.6e-40 170.2 419 35.6
Prupe.4G196300 Prunus persica HOM05D001950 ORTHO05D001926 3.3e-40 169.9 373 38.9
Gohir.D04G042400 Gossypium hirsutum HOM05D001950 ORTHO05D001926 3.7e-39 166.4 368 37.8
AT5G23490 Arabidopsis thaliana HOM05D001950 ORTHO05D001926 8.2e-39 165.2 332 39.5
A10p28320 Brassica napus HOM05D001950 ORTHO05D001926 8.2e-39 165.2 414 36.5
Thhalv10003713m.g Eutrema salsugineum HOM05D001950 ORTHO05D001926 8.2e-39 165.2 308 42.2
Lsat_1_v5_gn_3_105740 Lactuca sativa HOM05D001950 ORTHO05D001926 1.8e-38 164.1 338 38.8
ATR0730G044 Amborella trichopoda HOM05D001950 ORTHO05D001926 2.4e-38 163.7 401 35.7
Aa31LG3G18100 Aethionema arabicum HOM05D001950 ORTHO05D001926 3.1e-38 163.3 401 37.2
Thhalv10012799m.g Eutrema salsugineum HOM05D001950 ORTHO05D001926 4.1e-38 162.9 342 39.2
Sp6g34480 Schrenkiella parvula HOM05D001950 ORTHO05D001926 4.1e-38 162.9 343 38.8
Oeu017636.1 Olea europaea HOM05D001950 ORTHO05D001926 7.0e-38 162.2 422 34.4
C09p68580 Brassica napus HOM05D001950 ORTHO05D001926 2.7e-37 160.2 413 36.6
BolC9t59600H Brassica oleracea HOM05D001950 ORTHO05D001926 2.7e-37 160.2 413 36.6
AL6G18910 Arabidopsis lyrata HOM05D001950 ORTHO05D001926 5.9e-37 159.1 313 40.6
Sed0018159 Sechium edule HOM05D001950 ORTHO05D001926 7.7e-37 158.7 314 40.1
CARHR204570 Cardamine hirsuta HOM05D001950 ORTHO05D001926 1.0e-36 158.3 408 35.5
Sed0018397 Sechium edule HOM05D001950 ORTHO05D001926 1.0e-36 158.3 272 41.5
BcaNung03857 Brassica carinata HOM05D001950 ORTHO05D001926 2.2e-36 157.1 308 39.9
MD03G1185400 Malus domestica HOM05D001950 ORTHO05D001926 2.9e-36 156.8 302 42.1
ECA248G3652 Erigeron canadensis HOM05D001950 ORTHO05D001926 3.8e-36 156.4 370 37.8
Carub.0006s2127 Capsella rubella HOM05D001950 ORTHO05D001926 5.0e-36 156.0 305 40.0
Sp2g23690 Schrenkiella parvula HOM05D001950 ORTHO05D001926 5.0e-36 156.0 363 38.3
Gohir.D11G062500 Gossypium hirsutum HOM05D001950 ORTHO05D001926 6.5e-36 155.6 357 37.5
AT5G08440 Arabidopsis thaliana HOM05D001950 ORTHO05D001926 1.1e-35 154.8 417 34.5
HanXRQChr03g0062981 Helianthus annuus HOM05D001950 ORTHO05D001926 1.5e-35 154.5 412 35.2
Sabra04G0084400 Salix brachista HOM05D001950 ORTHO05D004648 1.5e-35 154.5 385 35.8
Gohir.A11G058200 Gossypium hirsutum HOM05D001950 ORTHO05D001926 2.5e-35 153.7 354 37.3
Gorai.007G067300 Gossypium raimondii HOM05D001950 ORTHO05D001926 3.2e-35 153.3 354 36.7
EL10Ac7g17771 Beta vulgaris HOM05D001950 ORTHO05D001926 4.2e-35 152.9 367 35.4
Ca_09912_v3 Cicer arietinum L. HOM05D001950 ORTHO05D001926 5.5e-35 152.5 212 49.1
Ca_29492_v3 Cicer arietinum L. HOM05D001950 ORTHO05D001926 5.5e-35 152.5 212 49.1
HanXRQChr10g0278891 Helianthus annuus HOM05D001950 ORTHO05D001926 5.5e-35 152.5 396 34.6
Potri.004G133700 Populus trichocarpa HOM05D001950 ORTHO05D001926 9.4e-35 151.8 386 35.8
Carub.0006s0736 Capsella rubella HOM05D001950 ORTHO05D001926 1.6e-34 151.0 314 38.5
Migut.M00002 Erythranthe guttata HOM05D001950 ORTHO05D001926 8.0e-34 148.7 449 31.6
CDE06G1086 Ceratophyllum demersum HOM05D001950 ORTHO05D001926 1.8e-33 147.5 278 40.3
BcaB04g19865 Brassica carinata HOM05D001950 ORTHO05D001926 2.3e-33 147.1 372 35.2
BraA06t26375Z Brassica rapa HOM05D001950 ORTHO05D001926 3.0e-33 146.7 292 41.8
A09p06920 Brassica napus HOM05D001950 ORTHO05D001926 4.0e-33 146.4 290 41.0
DCAR_009627 Daucus carota HOM05D001950 ORTHO05D001926 6.8e-33 145.6 333 35.7
Lj4C823T9 Lonicera japonica HOM05D001950 ORTHO05D001926 6.8e-33 145.6 187 51.3
A06p34470 Brassica napus HOM05D001950 ORTHO05D001926 1.2e-32 144.8 306 39.9
C09p07650 Brassica napus HOM05D001950 ORTHO05D001926 1.5e-32 144.4 335 37.3
TPR.G22212 Trifolium pratense HOM05D001950 ORTHO05D001926 2.0e-32 144.1 214 48.1
BcaNung03736 Brassica carinata HOM05D001950 ORTHO05D001926 2.6e-32 143.7 326 39.3
C07p44080 Brassica napus HOM05D001950 ORTHO05D001926 2.6e-32 143.7 326 39.3
BolC7t44932H Brassica oleracea HOM05D001950 ORTHO05D001926 2.6e-32 143.7 326 39.3
Hund07198 Selenicereus undatus HOM05D001950 ORTHO05D001926 3.4e-32 143.3 415 33.5
BcaC04g23499 Brassica carinata HOM05D001950 ORTHO05D001926 4.4e-32 142.9 332 36.7
BraA09t36339Z Brassica rapa HOM05D001950 ORTHO05D001926 4.4e-32 142.9 290 40.3
Aa31LG11G2900 Aethionema arabicum HOM05D001950 ORTHO05D001926 5.7e-32 142.5 312 37.8
Ah.08g213910 Amaranthus hybridus HOM05D001950 ORTHO05D001926 7.5e-32 142.1 387 34.1
MD11G1230900 Malus domestica HOM05D001950 ORTHO05D001926 7.5e-32 142.1 304 40.5
BcaB08g37261 Brassica carinata HOM05D001950 ORTHO05D001926 6.3e-31 139.0 408 34.1
SGA_v2.0_scaffold24G10259 Striga asiatica HOM05D001950 ORTHO05D001926 6.3e-31 139.0 309 36.2
AL6G34770 Arabidopsis lyrata HOM05D001950 ORTHO05D001926 8.3e-31 138.7 456 30.9
BraA10t44879Z Brassica rapa HOM05D001950 ORTHO05D001926 8.3e-31 138.7 288 39.2
MSTRG.14938 Avicennia marina HOM05D001950 ORTHO05D001926 1.1e-30 138.3 394 32.2
BolC9t53683H Brassica oleracea HOM05D001950 ORTHO05D001926 1.4e-30 137.9 334 36.5
AUR62031846 Chenopodium quinoa HOM05D001950 ORTHO05D001926 7.0e-30 135.6 392 34.9
AUR62008865 Chenopodium quinoa HOM05D001950 ORTHO05D001926 7.7e-29 132.1 261 41.4
DCAR_013191 Daucus carota HOM05D001950 ORTHO05D001926 1.9e-27 127.5 267 36.7
RcHm_v2.0_Chr5g0036791 Rosa chinensis HOM05D001950 ORTHO05D001926 4.2e-27 126.3 312 35.9
Mapoly0006s0025 Marchantia polymorpha HOM05D001950 ORTHO05D001926 7.2e-27 125.6 435 29.9
Lsat_1_v5_gn_9_123621 Lactuca sativa HOM05D001950 ORTHO05D001926 6.1e-26 122.5 148 54.1
SGA_v2.0_scaffold48G18053 Striga asiatica HOM05D001950 ORTHO05D001926 5.2e-25 119.4 426 29.3
FvH4_3g21410 Fragaria vesca HOM05D001950 ORTHO05D001926 2.8e-23 113.6 276 37.3
FAN11G2762 Fragaria x ananassa HOM05D001950 ORTHO05D001926 2.8e-23 113.6 276 37.3
SalBow5G1168 Salvia bowleyana HOM05D001950 ORTHO05D001926 1.1e-22 111.7 308 32.1
CDE02G0761 Ceratophyllum demersum HOM05D001950 ORTHO05D001926 5.9e-21 105.9 206 39.3
FAN16G0834 Fragaria x ananassa HOM05D001950 ORTHO05D001926 1.0e-20 105.1 276 34.4
AagrBONN_evm.TU.Sc2ySwM_228.2145 Anthoceros agrestis HOM05D001950 ORTHO05D001926 2.5e-19 100.5 341 29.9
Pp3c25_6170 Physcomitrium patens HOM05D001950 ORTHO05D001926 5.6e-19 99.4 295 33.2
unitig_746.g26624 Utricularia gibba HOM05D001950 ORTHO05D001926 3.6e-18 96.7 237 33.8
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 4.7e-18 96.3 148 45.9
ECA234G2980 Erigeron canadensis HOM05D001950 ORTHO05D001926 6.1e-18 95.9 124 46.0
Lsat_1_v5_gn_5_88520 Lactuca sativa HOM05D001950 ORTHO05D001926 4.0e-17 93.2 137 43.8
FAN21G3735 Fragaria x ananassa HOM05D001950 ORTHO05D001926 6.8e-17 92.4 276 33.7
DCAR_019940 Daucus carota HOM05D001950 ORTHO05D001926 7.5e-16 89.0 341 29.6
ATR0665G636 Amborella trichopoda HOM05D001950 ORTHO05D001926 6.4e-15 85.9 118 46.6
HanXRQChr10g0307771 Helianthus annuus HOM05D001950 ORTHO05D001926 6.4e-15 85.9 138 39.1
Pp3c14_26800 Physcomitrium patens HOM05D001950 ORTHO05D001926 8.3e-15 85.5 109 45.0
HanXRQChr12g0357861 Helianthus annuus HOM05D001950 ORTHO05D001926 1.4e-14 84.7 109 45.9
Nitab4.5_0003825g0020 Nicotiana tabacum HOM05D001950 ORTHO05D001926 5.4e-14 82.8 288 30.6
Zm00001eb126630 Zea mays HOM05D001950 ORTHO05D001926 9.2e-14 82.0 166 33.1
Pp3c16_14380 Physcomitrium patens HOM05D001950 ORTHO05D001926 1.2e-13 81.6 119 42.9
Pp3c5_13260 Physcomitrium patens HOM05D001950 ORTHO05D001926 1.2e-10 71.6 361 28.3
FAN25G2884 Fragaria x ananassa HOM05D001950 ORTHO05D001926 1.6e-10 71.2 320 29.7
Cpa.g.sc248.5 Carica papaya HOM05D001950 ORTHO05D001926 6.2e-10 69.3 195 31.3
Nitab4.5_0000796g0020 Nicotiana tabacum HOM05D001950 ORTHO05D001926 1.0e-09 68.6 79 53.2
AUR62023328 Chenopodium quinoa HOM05D001950 ORTHO05D001926 5.8e-08 62.8 133 33.1
AUR62038004 Chenopodium quinoa HOM05D001950 ORTHO05D001926 5.8e-08 62.8 126 33.3
PSO063G5797 Papaver somniferum HOM05D001950 ORTHO05D001926 2.2e-07 60.8 113 33.6
PSO782G3823 Papaver somniferum HOM05D001950 ORTHO05D001926 2.2e-07 60.8 113 33.6
CBR_g38362 Chara braunii HOM05D001950 ORTHO05D001926 2.9e-07 60.5 69 44.9
Nn1g00115 Nelumbo nucifera HOM05D001950 ORTHO05D001926 1.4e-06 58.2 104 32.7
Nn1g00116 Nelumbo nucifera HOM05D001950 ORTHO05D001926 1.4e-06 58.2 159 28.9
ECA248G3510 Erigeron canadensis HOM05D001950 ORTHO05D000001 1.9e-06 57.8 137 24.8
Potri.013G073400 Populus trichocarpa HOM05D001950 ORTHO05D001926 5.4e-06 56.2 100 31.0
Hma1.2p1_0466F.1_g158560 Hydrangea macrophylla HOM05D001950 ORTHO05D001926 7.0e-06 55.8 122 27.9


User provided reference genes

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