Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 1.0e-276 956.1 476 100.0
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 4.9e-101 372.5 450 47.8
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 6.4e-101 372.1 441 46.5
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 4.3e-97 359.4 436 48.4
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 4.8e-96 355.9 433 46.0
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 6.2e-96 355.5 433 47.1
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 5.8e-94 349.0 438 45.9
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.2e-93 347.1 435 45.5
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.1e-92 344.7 441 45.1
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.9e-92 344.0 440 45.5
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 2.7e-91 340.1 418 47.1
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 7.9e-91 338.6 437 44.6
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 3.9e-90 336.3 442 45.0
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.1e-89 334.7 442 45.5
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 4.3e-89 332.8 433 43.4
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 2.1e-88 330.5 428 45.3
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 2.1e-88 330.5 435 47.1
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 3.7e-88 329.7 415 43.9
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 6.3e-88 328.9 442 44.3
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 1.4e-87 327.8 435 44.4
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 4.1e-87 326.2 437 43.7
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.9e-87 325.5 437 43.7
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 9.0e-87 325.1 438 45.0
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.6e-86 323.6 437 44.6
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 3.4e-86 323.2 436 46.3
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 5.9e-86 322.4 437 42.8
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 7.6e-86 322.0 436 46.1
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 3.8e-85 319.7 419 43.4
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 5.0e-85 319.3 432 42.6
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 2.5e-84 317.0 438 42.7
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 3.2e-84 316.6 408 45.1
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 5.5e-84 315.8 435 44.4
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 5.5e-84 315.8 435 41.6
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.5e-84 315.8 436 43.1
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 7.2e-84 315.5 458 41.3
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 7.2e-84 315.5 445 41.3
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.2e-83 314.7 434 41.9
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 1.6e-83 314.3 438 42.7
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 2.7e-83 313.5 437 44.4
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 6.1e-83 312.4 461 40.6
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.0e-82 311.6 442 44.6
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.3e-82 311.2 439 41.2
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.5e-81 307.8 396 43.2
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.5e-81 307.8 435 42.1
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.9e-81 307.4 411 43.8
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 9.7e-81 305.1 412 42.2
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 6.3e-80 302.4 436 42.4
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 8.2e-80 302.0 412 42.7
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.8e-79 300.8 401 43.6
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 3.1e-79 300.1 437 42.8
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 3.1e-79 300.1 409 43.5
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 9.1e-79 298.5 433 41.6
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 2.0e-78 297.4 406 42.9
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 5.9e-78 295.8 438 42.2
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 5.9e-78 295.8 432 42.4
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 1.7e-77 294.3 411 41.6
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.7e-77 294.3 445 41.8
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 1.7e-77 294.3 430 41.6
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 8.5e-77 292.0 411 41.4
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 3.2e-76 290.0 415 41.4
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 3.2e-76 290.0 415 41.4
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 5.5e-76 289.3 436 42.2
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 7.2e-76 288.9 435 43.9
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 7.2e-76 288.9 414 40.8
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-75 287.3 415 41.2
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 6.1e-75 285.8 465 40.2
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.0e-74 285.0 395 44.3
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 1.4e-74 284.6 412 42.0
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 5.1e-74 282.7 399 43.4
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 6.7e-74 282.3 413 42.9
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 6.7e-74 282.3 393 43.0
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 8.8e-74 282.0 395 42.3
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.5e-73 281.2 402 41.8
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.6e-73 280.4 412 43.7
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 2.6e-73 280.4 437 38.7
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 4.8e-72 276.2 466 36.9
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 4.8e-72 276.2 400 42.5
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 1.1e-71 275.0 446 39.9
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.1e-71 275.0 433 39.7
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.4e-71 274.6 361 44.3
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.1e-71 273.5 436 40.4
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 5.3e-71 272.7 357 42.9
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 6.9e-71 272.3 472 39.2
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.2e-70 271.6 436 40.1
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.4e-70 270.0 437 39.4
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 2.9e-69 266.9 317 50.2
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 6.5e-69 265.8 404 39.6
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 8.5e-69 265.4 416 40.9
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.7e-67 260.4 400 40.5
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.0e-66 258.5 403 40.0
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 3.0e-66 256.9 412 39.3
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 3.0e-66 256.9 514 35.6
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 3.9e-66 256.5 424 39.6
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 4.4e-65 253.1 287 50.2
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 3.7e-64 250.0 386 41.2
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.6e-62 243.8 421 36.3
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 1.3e-61 241.5 321 44.9
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.5e-60 238.0 442 36.0
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 2.7e-59 233.8 317 45.1
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.2e-57 228.4 427 37.0
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 2.6e-57 227.3 275 45.8
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 6.3e-56 222.6 262 48.9
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 5.3e-55 219.5 332 38.3
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 1.6e-54 218.0 302 42.1
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 7.2e-52 209.1 451 32.4
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-50 204.9 267 45.3
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 3.0e-50 203.8 229 48.0
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.4e-49 200.3 541 28.5
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 2.2e-48 197.6 264 44.7
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.7e-48 196.8 441 33.6
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 9.1e-47 192.2 299 39.8
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 2.8e-43 180.6 513 28.8
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 4.0e-42 176.8 415 30.8
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.2e-40 171.0 411 31.4
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 4.9e-40 169.9 191 46.1
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 2.7e-38 164.1 277 38.6
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 2.7e-38 164.1 522 28.0
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 1.0e-34 152.1 441 29.7
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 7.5e-33 146.0 192 39.6
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-32 145.2 233 40.3
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 6.4e-32 142.9 281 34.2
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 2.7e-30 137.5 218 40.4
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 4.6e-30 136.7 403 29.0
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.5e-28 131.7 189 44.4
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 6.2e-27 126.3 184 42.9
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 6.8e-26 122.9 136 49.3
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 6.8e-26 122.9 136 49.3
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 6.8e-26 122.9 430 27.2
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 1.2e-25 122.1 157 40.8
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 4.1e-23 113.6 126 56.3
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 2.5e-20 104.4 169 39.6
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 2.1e-19 101.3 167 40.7
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 1.2e-17 95.5 200 34.5
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.5e-17 95.1 222 31.5
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.5e-17 95.1 163 37.4
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 4.9e-16 90.1 137 36.5
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-15 88.6 89 48.3
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 1.4e-15 88.6 176 34.1
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.2e-15 87.4 136 35.3
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.2e-14 85.5 140 38.6
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 8.6e-13 79.3 101 43.6
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 4.0e-10 70.5 94 39.4
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 6.8e-10 69.7 66 56.1
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 1.5e-09 68.6 122 32.8
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 5.8e-09 66.6 143 32.2
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 6.0e-06 56.6 55 49.1


User provided reference genes

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