Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 2.0e-158 562.4 279 100.0
HPP92_027529 Vanilla planifolia HOM05D048574 ORTHO05D430906 3.0e-66 256.1 129 96.1
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 9.1e-47 191.4 93 98.9
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.6e-19 100.9 134 44.0
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 6.2e-19 99.0 268 31.3
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.4e-18 97.8 89 51.7
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 5.2e-18 95.9 167 36.5
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.4e-17 93.2 128 39.8
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 5.8e-17 92.4 106 45.3
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.9e-17 91.7 91 48.4
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.9e-17 91.7 147 36.7
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 2.9e-16 90.1 117 43.6
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 6.4e-16 89.0 87 46.0
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 8.3e-16 88.6 117 41.9
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 8.3e-16 88.6 87 46.0
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 8.3e-16 88.6 135 43.0
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 1.4e-15 87.8 293 30.4
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.9e-15 87.4 228 30.7
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 1.9e-15 87.4 269 29.4
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 3.2e-15 86.7 232 31.0
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.2e-15 86.7 145 39.3
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 3.2e-15 86.7 263 28.5
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 7.1e-15 85.5 98 42.9
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 9.2e-15 85.1 232 28.9
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.2e-15 85.1 228 30.3
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.2e-14 84.7 144 38.2
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.6e-14 84.3 210 32.9
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 2.1e-14 84.0 95 44.2
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.7e-14 83.6 117 39.3
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 2.7e-14 83.6 103 42.7
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 3.5e-14 83.2 145 33.8
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 4.6e-14 82.8 239 29.7
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 4.6e-14 82.8 154 37.7
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.6e-14 82.8 135 37.0
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 6.0e-14 82.4 93 44.1
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 6.0e-14 82.4 197 27.4
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 6.0e-14 82.4 257 28.8
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 6.0e-14 82.4 249 28.1
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 7.8e-14 82.0 93 40.9
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 7.8e-14 82.0 225 29.3
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 1.0e-13 81.6 147 34.7
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.0e-13 81.6 228 29.4
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.0e-13 81.6 82 48.8
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.3e-13 81.3 108 40.7
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.3e-13 81.3 298 27.2
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.7e-13 80.9 144 35.4
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 1.7e-13 80.9 92 44.6
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.7e-13 80.9 132 34.8
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 2.3e-13 80.5 107 42.1
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 2.3e-13 80.5 182 31.3
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 3.0e-13 80.1 242 28.9
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.0e-13 80.1 131 35.1
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 3.9e-13 79.7 153 35.3
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.9e-13 79.7 211 30.3
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 5.1e-13 79.3 116 38.8
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 6.6e-13 79.0 151 35.8
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 6.6e-13 79.0 83 47.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 8.6e-13 78.6 113 38.1
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.1e-12 78.2 208 28.8
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 1.1e-12 78.2 228 29.8
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.5e-12 77.8 143 33.6
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 1.9e-12 77.4 111 38.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.9e-12 77.4 106 41.5
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 1.9e-12 77.4 241 30.3
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.9e-12 77.4 86 47.7
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.9e-12 77.4 156 35.9
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.9e-12 77.4 201 31.3
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 2.5e-12 77.0 93 36.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.3e-12 76.6 81 44.4
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.3e-12 76.6 93 39.8
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.3e-12 76.6 108 36.1
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 3.3e-12 76.6 85 45.9
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 4.3e-12 76.3 248 29.4
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 5.6e-12 75.9 222 27.9
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.6e-12 75.9 158 35.4
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 5.6e-12 75.9 266 27.8
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 7.3e-12 75.5 230 30.4
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 7.3e-12 75.5 108 40.7
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 7.3e-12 75.5 84 44.0
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 9.5e-12 75.1 79 44.3
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.5e-12 75.1 272 28.7
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 9.5e-12 75.1 160 31.2
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.6e-11 74.3 110 38.2
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.6e-11 74.3 83 45.8
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 2.1e-11 73.9 93 39.8
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.1e-11 73.9 82 41.5
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 2.1e-11 73.9 195 32.3
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.1e-11 73.9 92 40.2
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 2.8e-11 73.6 83 43.4
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 3.6e-11 73.2 93 38.7
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 4.7e-11 72.8 237 27.0
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 4.7e-11 72.8 95 40.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 4.7e-11 72.8 89 39.3
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 6.2e-11 72.4 149 32.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 6.2e-11 72.4 159 34.0
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 6.2e-11 72.4 84 44.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.2e-11 72.4 117 36.8
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 8.1e-11 72.0 107 37.4
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 8.1e-11 72.0 107 37.4
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 8.1e-11 72.0 117 36.8
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.1e-11 72.0 196 30.1
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.1e-11 72.0 246 28.0
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.1e-10 71.6 86 39.5
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.1e-10 71.6 194 30.4
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.1e-10 71.6 119 36.1
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.4e-10 71.2 110 34.5
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.4e-10 71.2 111 36.0
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.4e-10 71.2 85 42.4
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.8e-10 70.9 117 35.9
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.4e-10 70.5 225 30.2
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 4.0e-10 69.7 94 43.6
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.2e-10 69.3 99 37.4
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 5.2e-10 69.3 186 28.0
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 5.2e-10 69.3 152 30.3
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 6.8e-10 68.9 92 39.1
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.8e-10 68.9 83 38.6
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.9e-10 68.6 81 39.5
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 8.9e-10 68.6 126 31.7
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 8.9e-10 68.6 271 26.2
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 8.9e-10 68.6 148 31.8
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.2e-09 68.2 88 37.5
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.2e-09 68.2 83 38.6
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 1.5e-09 67.8 108 37.0
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.5e-09 67.8 111 36.0
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.5e-09 67.8 83 39.8
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.5e-09 67.8 89 37.1
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.0e-09 67.4 88 37.5
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 2.0e-09 67.4 86 38.4
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.6e-09 67.0 83 39.8
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 3.4e-09 66.6 88 35.2
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 3.4e-09 66.6 120 35.8
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 4.4e-09 66.2 68 47.1
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 7.6e-09 65.5 222 25.2
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 9.9e-09 65.1 83 41.0
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 9.9e-09 65.1 117 33.3
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.3e-08 64.7 94 37.2
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.7e-08 64.3 90 35.6
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.7e-08 64.3 83 41.0
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 2.2e-08 63.9 82 39.0
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 3.8e-08 63.2 178 28.7
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 3.8e-08 63.2 201 28.9
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 4.9e-08 62.8 68 44.1
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.1e-07 61.6 80 33.8
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 1.1e-07 61.6 83 41.0
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.1e-07 61.6 97 32.0
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.4e-07 61.2 92 34.8
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 1.4e-07 61.2 93 36.6
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.9e-07 60.8 89 31.5
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 1.9e-07 60.8 127 29.1
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.4e-07 60.5 85 32.9
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 4.1e-07 59.7 55 49.1
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 4.1e-07 59.7 169 28.4
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 5.4e-07 59.3 66 45.5
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.4e-07 59.3 156 28.8
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 5.4e-07 59.3 82 37.8
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 2.1e-06 57.4 68 41.2
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 2.1e-06 57.4 164 27.4
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 2.1e-06 57.4 74 36.5
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.7e-06 57.0 89 36.0
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 6.0e-06 55.8 136 27.2
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 7.8e-06 55.5 89 36.0
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 7.8e-06 55.5 212 26.4


User provided reference genes

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