Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003007 Vanilla planifolia HOM05D003599 ORTHO05D004221 1.1e-173 613.2 321 100.0
HPP92_003005 Vanilla planifolia HOM05D003599 ORTHO05D004221 7.1e-136 487.6 263 98.5
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 1.8e-75 287.0 269 59.9
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 9.1e-75 284.6 271 58.7
TAR369G0496 Trochodendron aralioides HOM05D003599 ORTHO05D004221 1.6e-74 283.9 265 60.4
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 2.0e-74 283.5 271 58.3
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 4.5e-74 282.3 271 59.0
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 4.5e-74 282.3 271 59.0
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 5.9e-74 282.0 272 59.9
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 1.0e-73 281.2 267 59.2
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 1.0e-73 281.2 270 57.4
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 2.2e-73 280.0 267 61.4
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 2.9e-73 279.6 267 60.3
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 2.9e-73 279.6 267 57.7
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 6.5e-73 278.5 273 57.1
MBI01_g25789_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 6.5e-73 278.5 275 58.2
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 6.5e-73 278.5 269 58.4
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 8.5e-73 278.1 271 57.9
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 1.1e-72 277.7 269 59.9
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 1.1e-72 277.7 279 55.6
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 3.2e-72 276.2 267 58.1
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 3.2e-72 276.2 269 59.5
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 4.2e-72 275.8 267 58.8
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 4.2e-72 275.8 274 56.6
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 4.2e-72 275.8 267 59.6
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 4.2e-72 275.8 268 59.7
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 9.4e-72 274.6 193 69.9
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 1.6e-71 273.9 269 58.4
Dinv09382 Davidia involucrata HOM05D003599 ORTHO05D004221 2.1e-71 273.5 267 60.3
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 2.7e-71 273.1 279 57.0
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 4.7e-71 272.3 299 53.2
TPR.G12253 Trifolium pratense HOM05D003599 ORTHO05D004221 4.7e-71 272.3 275 56.7
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 6.1e-71 271.9 267 59.2
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 8.0e-71 271.6 279 55.2
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 1.8e-70 270.4 267 58.4
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 1.8e-70 270.4 280 57.9
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 2.3e-70 270.0 276 56.9
vmacro13648 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 2.3e-70 270.0 184 72.8
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 4.0e-70 269.2 273 56.8
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 4.0e-70 269.2 268 57.5
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 5.2e-70 268.9 267 56.6
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 6.8e-70 268.5 268 57.5
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 8.8e-70 268.1 267 57.3
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 2.6e-69 266.5 267 55.8
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 3.4e-69 266.2 280 55.0
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 3.4e-69 266.2 272 58.1
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 5.7e-69 265.4 267 57.7
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 7.5e-69 265.0 267 55.8
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 9.8e-69 264.6 184 71.7
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 1.7e-68 263.8 297 55.6
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 1.7e-68 263.8 276 56.5
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 2.2e-68 263.5 278 57.6
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 2.2e-68 263.5 270 57.4
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 2.8e-68 263.1 268 55.6
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 4.8e-68 262.3 270 54.8
Solyc01g086750.4 Solanum lycopersicum HOM05D003599 ORTHO05D004221 6.3e-68 261.9 267 55.8
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 8.3e-68 261.5 292 51.4
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 8.3e-68 261.5 185 70.8
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 8.3e-68 261.5 270 57.0
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 8.3e-68 261.5 267 55.4
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 1.1e-67 261.2 273 54.9
CDE05G2577 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 1.4e-67 260.8 294 53.4
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 1.4e-67 260.8 276 55.4
Lalb_Chr20g0108091 Lupinus albus HOM05D003599 ORTHO05D004221 1.4e-67 260.8 276 55.4
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 1.4e-67 260.8 268 55.6
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 2.4e-67 260.0 271 55.7
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 3.1e-67 259.6 271 55.4
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 4.1e-67 259.2 266 54.9
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 5.4e-67 258.8 185 69.7
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 9.1e-67 258.1 319 49.5
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 9.1e-67 258.1 266 56.0
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 9.1e-67 258.1 265 53.6
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.2e-66 257.7 271 56.5
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.2e-66 257.7 275 56.0
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.6e-66 257.3 280 53.6
FAN12G0382 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.6e-66 257.3 280 53.6
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 2.0e-66 256.9 306 51.0
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 2.7e-66 256.5 185 71.4
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 2.7e-66 256.5 280 53.6
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 3.5e-66 256.1 267 55.4
SHI28919 Sapria himalayana HOM05D003599 ORTHO05D004221 5.9e-66 255.4 266 53.8
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 7.7e-66 255.0 276 55.8
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 7.7e-66 255.0 271 54.6
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 1.0e-65 254.6 271 54.6
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.7e-65 253.8 280 55.7
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 5.0e-65 252.3 268 53.7
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 6.6e-65 251.9 183 69.4
SGA_v2.0_scaffold5G03126 Striga asiatica HOM05D003599 ORTHO05D004221 8.6e-65 251.5 271 55.7
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 2.5e-64 250.0 185 68.6
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 2.5e-64 250.0 268 52.2
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 3.3e-64 249.6 183 67.8
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 5.5e-64 248.8 185 68.1
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 7.2e-64 248.4 273 53.1
BcaB02g08585 Brassica carinata HOM05D003599 ORTHO05D004221 9.5e-64 248.1 274 52.9
BolC8t50358H Brassica oleracea HOM05D003599 ORTHO05D004221 1.2e-63 247.7 183 67.8
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 1.2e-63 247.7 183 66.7
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 1.6e-63 247.3 281 51.2
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 1.6e-63 247.3 268 54.9
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 1.6e-63 247.3 268 51.5
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 1.6e-63 247.3 277 51.3
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 2.8e-63 246.5 268 54.9
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 2.8e-63 246.5 268 54.9
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 2.8e-63 246.5 272 52.6
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 6.1e-63 245.4 269 53.2
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 8.0e-63 245.0 266 52.3
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 1.4e-62 244.2 183 67.2
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 1.4e-62 244.2 292 50.7
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 8.9e-62 241.5 242 56.2
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 3.4e-61 239.6 183 63.9
SGA_v2.0_scaffold260G45866 Striga asiatica HOM05D003599 ORTHO05D004221 3.4e-61 239.6 305 50.2
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 9.8e-61 238.0 278 49.6
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 3.7e-60 236.1 266 53.4
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 2.4e-59 233.4 294 48.6
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 7.0e-59 231.9 243 50.2
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 9.2e-59 231.5 241 50.6
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 1.5e-53 214.2 301 43.2
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 7.5e-53 211.8 204 53.9
TPR.G26308 Trifolium pratense HOM05D003599 ORTHO05D004221 3.9e-49 199.5 229 53.3
unitig_0.g1376 Utricularia gibba HOM05D003599 ORTHO05D004221 2.0e-45 187.2 268 46.3
BcaNung06096 Brassica carinata HOM05D003599 ORTHO05D004221 3.4e-45 186.4 185 54.6
HanXRQChr12g0377841 Helianthus annuus HOM05D003599 ORTHO05D004221 9.8e-45 184.9 121 73.6
HanXRQChr17g0548731 Helianthus annuus HOM05D003599 ORTHO05D004221 9.8e-45 184.9 121 73.6
CBR_g110 Chara braunii HOM05D003599 ORTHO05D004221 8.6e-41 171.8 269 42.8
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 8.1e-39 165.2 265 41.5
Actinidia31047 Actinidia chinensis HOM05D003599 ORTHO05D004221 3.4e-37 159.8 105 73.3
SMO141G0154 Selaginella moellendorffii HOM05D003599 ORTHO05D004221 1.7e-36 157.5 265 37.4
Actinidia32321 Actinidia chinensis HOM05D003599 ORTHO05D004221 1.2e-29 134.8 103 68.9
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.3e-15 88.2 56 75.0
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 1.1e-11 75.1 50 68.0
Cpa.g.sc945.1 Carica papaya HOM05D003599 ORTHO05D004221 2.4e-11 73.9 50 72.0
Actinidia32320 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.3e-09 67.4 40 72.5


User provided reference genes

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