Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 0.0e+00 1090.1 542 100.0
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 6.9e-176 621.3 560 58.8
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.1e-172 609.8 552 58.7
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 9.1e-168 594.3 541 57.7
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 4.5e-159 565.5 545 56.0
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 6.5e-158 561.6 540 55.2
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 6.5e-158 561.6 543 54.1
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.9e-157 560.1 542 54.4
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 2.5e-157 559.7 544 53.7
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 7.2e-157 558.1 540 55.0
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 2.7e-156 556.2 536 53.5
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.7e-156 556.2 546 54.2
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 6.1e-156 555.1 541 52.9
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 6.1e-156 555.1 537 53.8
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 6.1e-156 555.1 548 53.5
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.0e-155 554.3 568 53.3
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 2.3e-155 553.1 531 55.2
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 8.8e-155 551.2 513 55.6
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 7.5e-154 548.1 553 53.9
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 2.2e-153 546.6 533 52.9
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 4.8e-153 545.4 528 53.8
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 4.8e-153 545.4 541 54.7
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 1.1e-152 544.3 533 53.8
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.1e-152 544.3 541 54.7
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 1.4e-152 543.9 515 54.6
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.8e-152 543.5 537 53.1
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.8e-152 543.5 540 53.9
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 2.4e-152 543.1 567 53.1
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 7.0e-152 541.6 547 52.8
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.1e-152 541.2 539 52.9
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 1.2e-151 540.8 539 53.1
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.7e-151 539.7 539 52.9
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.7e-151 539.7 539 53.1
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.7e-151 539.7 539 53.1
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 4.5e-151 538.9 554 52.9
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 7.7e-151 538.1 539 52.1
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 7.7e-151 538.1 515 54.8
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.3e-150 537.3 548 53.3
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 2.9e-150 536.2 551 53.9
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 3.8e-150 535.8 523 52.6
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 5.0e-150 535.4 544 52.2
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 6.5e-150 535.0 523 52.8
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 6.5e-150 535.0 552 51.4
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 6.5e-150 535.0 552 51.4
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 8.5e-150 534.6 552 51.3
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.5e-149 533.9 513 54.0
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 7.2e-149 531.6 540 52.4
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 7.2e-149 531.6 523 53.9
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.6e-148 530.4 544 52.2
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 2.1e-148 530.0 544 52.0
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 4.7e-148 528.9 538 52.0
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 6.1e-148 528.5 538 52.2
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.0e-147 527.7 558 51.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 4.0e-147 525.8 542 51.8
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.2e-146 524.2 521 53.4
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 9.8e-146 521.2 519 53.6
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.3e-145 520.8 524 53.1
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.8e-145 519.6 547 51.9
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 4.9e-145 518.8 540 51.5
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 6.3e-145 518.5 543 51.7
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 3.1e-144 516.2 517 52.6
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 1.2e-143 514.2 529 53.5
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 5.9e-143 511.9 501 56.1
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.0e-142 511.1 564 49.6
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 2.9e-142 509.6 510 52.5
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.9e-141 506.9 550 51.1
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 2.5e-141 506.5 514 55.1
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 7.3e-141 505.0 542 51.7
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 1.6e-140 503.8 542 50.7
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 1.6e-140 503.8 551 50.3
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 2.1e-140 503.4 524 52.1
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 2.8e-140 503.1 575 48.5
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 4.7e-140 502.3 547 49.4
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 1.3e-137 494.2 516 49.4
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 8.3e-137 491.5 519 49.1
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 5.4e-136 488.8 538 49.8
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 9.2e-136 488.0 562 48.8
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 1.2e-135 487.6 568 48.4
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 1.2e-135 487.6 542 50.2
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 2.0e-135 486.9 544 50.9
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 1.1e-133 481.1 528 49.8
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 5.6e-133 478.8 521 50.7
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 7.3e-133 478.4 525 50.5
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 8.0e-132 474.9 694 42.5
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 4.0e-131 472.6 525 50.7
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 4.0e-131 472.6 540 50.0
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.2e-130 471.1 540 49.8
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.7e-129 467.2 544 47.8
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 3.7e-129 466.1 530 49.4
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 4.9e-129 465.7 546 49.5
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 6.4e-129 465.3 514 47.9
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 1.1e-128 464.5 499 50.7
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 6.0e-127 458.8 550 48.0
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 7.8e-127 458.4 539 48.6
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 1.0e-126 458.0 588 46.8
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 2.3e-126 456.8 538 47.0
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.5e-125 454.1 550 47.3
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 1.9e-125 453.8 539 48.2
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 4.3e-125 452.6 530 49.8
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.5e-122 444.1 559 47.0
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 3.4e-122 443.0 548 46.0
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.2e-119 434.5 489 50.5
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 4.6e-119 432.6 429 52.7
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 4.6e-119 432.6 411 56.2
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 5.6e-109 399.1 380 55.8
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.9e-105 386.0 706 37.3
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.8e-99 367.5 415 50.6
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 5.8e-98 362.5 353 55.2
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 7.9e-95 352.1 535 40.0
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 8.7e-94 348.6 338 55.6
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.6e-92 344.4 315 56.8
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.1e-91 340.1 343 55.4
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 7.9e-87 325.5 535 35.3
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 4.3e-85 319.7 321 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 2.8e-84 317.0 534 34.6
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 3.7e-84 316.6 533 35.1
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 3.7e-84 316.6 508 36.4
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 1.1e-83 315.1 334 51.5
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 3.2e-80 303.5 392 46.7
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.1e-77 295.0 338 46.4
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 8.5e-73 278.9 358 45.8
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 7.7e-58 229.2 341 43.7
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 2.9e-57 227.3 145 74.5
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 1.4e-51 208.4 165 63.6
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.5e-48 198.4 147 62.6
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 6.1e-47 193.0 143 64.3
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 3.0e-46 190.7 579 27.3
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 3.0e-46 190.7 126 68.3
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 5.3e-43 179.9 124 66.1
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.7e-42 177.6 205 44.4
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.9e-40 171.4 193 45.1
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 6.3e-36 156.4 96 72.9
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.5e-32 145.2 189 42.3
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.4e-29 134.0 83 73.5
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.5e-21 108.6 127 45.7
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 2.0e-18 98.2 129 42.6
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 5.9e-18 96.7 113 46.9
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.6e-17 93.2 53 79.2
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 4.3e-16 90.5 104 42.3
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 7.3e-16 89.7 99 45.5
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.8e-14 83.2 106 42.5
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 9.8e-13 79.3 137 32.8
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.0e-09 69.3 109 35.8
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.3e-09 68.9 81 51.9
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 1.3e-09 68.9 101 39.6
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.9e-09 67.4 89 36.0
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 5.0e-09 67.0 168 36.3
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 7.3e-08 63.2 123 31.7
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 2.8e-07 61.2 68 42.6
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 8.1e-07 59.7 74 41.9
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.3e-06 58.2 85 37.6


User provided reference genes

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