Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 4.9e-160 567.8 289 100.0
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 3.3e-108 395.6 253 75.9
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 4.8e-107 391.7 252 75.0
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.0e-105 386.3 259 73.4
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 4.5e-105 385.2 253 72.7
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.9e-103 379.8 252 70.6
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 7.9e-102 374.4 289 67.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 6.7e-101 371.3 263 69.2
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 6.2e-99 364.8 253 70.4
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.1e-98 364.0 253 70.0
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.8e-98 363.2 278 64.4
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 2.4e-98 362.8 253 68.8
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.1e-98 362.5 238 72.7
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 5.3e-98 361.7 255 68.6
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.2e-97 360.5 289 63.0
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.2e-97 360.5 253 69.2
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.2e-97 360.5 258 68.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 2.0e-97 359.8 264 67.8
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.0e-97 359.8 258 68.2
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 4.5e-97 358.6 258 67.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.0e-96 357.5 295 62.7
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.0e-96 357.5 255 67.8
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.2e-96 356.3 256 69.5
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.2e-96 356.3 256 69.5
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.2e-96 356.3 281 64.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.8e-96 355.5 253 66.0
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 3.8e-96 355.5 271 63.8
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.8e-96 355.5 281 64.1
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 3.8e-96 355.5 246 69.5
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 4.9e-96 355.1 240 70.4
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 8.4e-96 354.4 248 70.2
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 8.4e-96 354.4 241 68.9
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.1e-95 354.0 282 64.9
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.9e-95 353.2 245 68.6
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.2e-94 350.5 245 69.8
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 7.9e-94 347.8 252 65.9
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.3e-93 347.1 260 65.4
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.0e-93 345.9 272 63.6
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 3.9e-93 345.5 226 72.6
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 5.1e-93 345.1 274 63.1
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 6.7e-93 344.7 295 60.3
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.9e-92 343.2 254 66.5
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.5e-92 342.8 252 66.7
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 2.5e-92 342.8 244 67.2
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 5.7e-92 341.7 252 66.7
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 7.4e-92 341.3 254 65.4
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 9.7e-92 340.9 295 63.1
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.3e-91 340.5 252 66.7
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.2e-91 339.7 254 67.3
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 4.8e-91 338.6 240 67.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 4.8e-91 338.6 255 66.3
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 6.3e-91 338.2 250 64.4
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 8.2e-91 337.8 259 63.3
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.4e-90 337.0 253 65.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.4e-90 337.0 263 63.1
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.1e-90 335.9 244 65.6
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.5e-89 333.6 271 62.7
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 5.9e-89 331.6 235 66.8
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 7.7e-89 331.3 223 71.3
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.2e-88 329.7 261 62.5
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-88 329.7 258 62.4
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 2.9e-88 329.3 218 72.5
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 3.8e-88 328.9 236 68.2
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.5e-88 328.2 258 62.4
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 8.5e-88 327.8 252 62.3
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.1e-87 327.4 237 66.2
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 1.1e-87 327.4 261 61.7
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.4e-87 327.0 236 67.4
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.5e-87 326.2 235 67.2
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 4.2e-87 325.5 258 62.0
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 5.5e-87 325.1 300 57.7
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-86 323.9 251 64.1
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 3.6e-86 322.4 260 61.2
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.4e-85 320.5 258 60.9
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.4e-85 320.5 258 60.9
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.4e-85 320.5 232 68.5
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.8e-85 320.1 300 56.3
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.8e-85 320.1 254 62.2
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.3e-85 319.7 236 66.1
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.3e-85 319.7 245 63.7
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 3.0e-85 319.3 258 62.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.5e-84 316.2 238 66.0
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 3.3e-84 315.8 294 56.1
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 7.4e-84 314.7 258 62.0
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.3e-83 313.9 266 58.6
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 7.7e-81 304.7 253 60.9
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 2.2e-80 303.1 293 56.7
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-80 303.1 238 61.8
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.6e-78 297.0 239 60.3
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.1e-78 296.6 248 58.1
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.8e-77 293.5 237 60.3
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 2.3e-77 293.1 235 60.9
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 8.8e-77 291.2 290 51.4
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.6e-76 289.7 229 60.3
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 7.4e-76 288.1 275 56.4
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 9.1e-74 281.2 262 57.3
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.5e-73 280.4 183 73.2
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.7e-72 276.9 251 57.0
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 6.5e-72 275.0 233 57.9
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 7.2e-71 271.6 173 75.1
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 7.2e-71 271.6 220 60.9
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-70 270.0 217 60.8
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 2.6e-68 263.1 283 52.7
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 2.8e-67 259.6 175 71.4
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.2e-65 254.2 255 51.8
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 2.0e-65 253.4 289 49.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 3.2e-63 246.1 227 55.5
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.6e-60 236.5 248 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.2e-59 233.4 251 47.8
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.1e-58 231.1 234 52.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 4.1e-58 229.2 164 63.4
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 6.8e-53 211.8 247 44.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 4.8e-51 205.7 236 52.1
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-50 204.1 153 62.7
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 4.2e-47 192.6 226 48.2
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 4.4e-44 182.6 112 77.7
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 2.4e-42 176.8 147 60.5
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 4.7e-38 162.5 223 42.2
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 9.2e-34 148.3 130 60.8
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.1e-29 134.8 109 56.0
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 2.3e-29 133.7 142 50.7
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 2.1e-25 120.6 80 68.8
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 2.1e-25 120.6 89 62.9
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-24 117.5 80 67.5
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 1.1e-23 114.8 86 65.1
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.5e-23 114.4 188 34.0
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.4e-21 107.8 81 64.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.7e-19 99.8 143 35.0
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.5e-15 87.8 197 32.5
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 5.6e-15 85.9 80 57.5
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 2.9e-11 73.6 52 67.3
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 3.8e-11 73.2 214 28.5
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.9e-10 70.9 61 59.0
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 7.1e-10 68.9 59 50.8
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 4.6e-09 66.2 57 52.6
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.8e-09 65.5 71 46.5
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 3.9e-08 63.2 71 45.1
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.9e-08 63.2 71 45.1
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.9e-08 63.2 71 45.1
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 8.7e-08 62.0 85 38.8
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.5e-07 61.2 71 43.7


User provided reference genes

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