Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 5.0e-91 337.8 175 100.0
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 5.0e-59 231.5 157 73.9
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 8.5e-59 230.7 156 76.9
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.5e-58 229.2 157 73.9
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 2.7e-57 225.7 153 74.5
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 1.0e-56 223.8 152 75.7
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 3.0e-56 222.2 156 74.4
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 3.0e-56 222.2 157 72.0
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 3.0e-56 222.2 152 73.0
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 4.0e-56 221.9 152 75.7
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 8.8e-56 220.7 155 72.9
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 2.0e-55 219.5 153 75.2
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 5.7e-55 218.0 156 70.5
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.7e-54 216.5 160 71.9
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.7e-54 216.5 165 68.5
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.2e-54 216.1 160 71.2
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.2e-54 216.1 158 66.5
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 2.8e-54 215.7 156 69.9
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.8e-54 215.7 161 68.9
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 4.8e-54 214.9 152 73.0
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.8e-54 214.9 164 67.7
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.3e-54 214.5 156 69.9
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 8.3e-54 214.2 152 72.4
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 8.3e-54 214.2 153 71.9
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 8.3e-54 214.2 153 70.6
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.3e-54 214.2 156 69.9
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 8.3e-54 214.2 160 68.1
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.1e-53 213.8 156 68.6
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-53 213.8 155 70.3
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.1e-53 213.8 168 66.7
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.1e-53 213.8 145 73.8
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.1e-53 213.8 156 69.9
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.4e-53 213.4 153 69.3
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.4e-53 213.4 152 72.4
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.4e-53 213.4 152 72.4
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.4e-53 213.4 156 69.9
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.8e-53 213.0 152 72.4
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.8e-53 213.0 157 68.8
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.8e-53 213.0 156 69.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.8e-53 213.0 156 69.2
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.8e-53 213.0 156 71.8
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.8e-53 213.0 153 70.6
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.1e-53 212.2 152 71.7
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 3.1e-53 212.2 152 72.4
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.1e-53 212.2 156 69.2
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 4.1e-53 211.8 152 71.7
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 4.1e-53 211.8 150 72.7
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 4.1e-53 211.8 156 69.2
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 5.4e-53 211.5 156 69.2
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 7.0e-53 211.1 153 68.6
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.0e-53 211.1 153 69.9
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 9.1e-53 210.7 153 69.9
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.2e-52 210.3 153 69.9
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.6e-52 209.9 153 69.9
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.6e-52 209.9 153 71.2
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 2.0e-52 209.5 152 71.1
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 2.0e-52 209.5 155 67.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.7e-52 209.1 153 70.6
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 2.7e-52 209.1 152 71.7
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 3.5e-52 208.8 153 70.6
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 3.5e-52 208.8 159 66.0
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 3.5e-52 208.8 159 66.0
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 3.5e-52 208.8 152 71.1
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 3.5e-52 208.8 150 72.7
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 4.5e-52 208.4 153 69.3
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 5.9e-52 208.0 156 68.6
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.0e-51 207.2 148 72.3
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.0e-51 207.2 155 68.4
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.3e-51 206.8 156 67.9
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.3e-51 206.8 156 67.3
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.7e-51 206.5 159 68.6
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.7e-51 206.5 155 69.7
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.7e-51 206.5 148 71.6
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 1.7e-51 206.5 150 71.3
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 2.9e-51 205.7 150 70.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 2.9e-51 205.7 153 68.0
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 3.8e-51 205.3 153 69.3
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 5.0e-51 204.9 159 67.3
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 6.5e-51 204.5 152 69.7
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 6.5e-51 204.5 159 66.7
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 8.5e-51 204.1 150 70.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 8.5e-51 204.1 152 69.7
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.1e-50 203.8 155 66.5
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.5e-50 203.4 147 71.4
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.5e-50 203.4 155 67.7
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.9e-50 203.0 153 67.3
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 1.9e-50 203.0 148 69.6
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.9e-50 203.0 168 70.8
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.5e-50 202.6 161 66.5
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.5e-50 202.6 155 67.7
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 3.2e-50 202.2 150 70.0
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 3.2e-50 202.2 155 67.7
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 4.2e-50 201.8 148 69.6
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.0e-48 197.2 161 65.8
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 1.4e-48 196.8 152 70.4
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 6.8e-48 194.5 154 64.3
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.5e-47 193.4 139 72.7
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 2.2e-46 189.5 137 69.3
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 2.8e-46 189.1 153 66.0
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 3.3e-42 175.6 153 61.4
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 3.2e-37 159.1 160 54.4
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 3.5e-36 155.6 152 55.9
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.4e-32 143.7 112 67.0
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.0e-31 139.8 92 75.0
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 1.4e-29 133.7 154 48.1
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.9e-29 133.3 156 48.1
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.3e-26 121.3 93 65.6
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 2.6e-23 112.8 134 47.8
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 2.2e-22 109.8 163 44.8
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.6e-20 103.6 78 65.4
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 4.3e-18 95.5 130 41.5
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 2.6e-15 86.3 148 40.5
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 5.8e-15 85.1 88 53.4
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 3.7e-14 82.4 152 38.8


User provided reference genes

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