Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.2e-68 263.1 138 100.0
HPP92_002807 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.6e-28 129.8 128 63.3
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 3.5e-23 112.1 104 58.7
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 1.3e-22 110.2 119 49.6
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 1.7e-22 109.8 105 57.1
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 8.6e-22 107.5 113 52.2
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 8.6e-22 107.5 107 54.2
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 1.5e-21 106.7 110 53.6
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 1.5e-21 106.7 90 58.9
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 3.3e-21 105.5 110 50.9
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 4.3e-21 105.1 125 47.2
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 4.3e-21 105.1 103 54.4
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 4.3e-21 105.1 109 49.5
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 4.3e-21 105.1 90 55.6
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 5.6e-21 104.8 93 54.8
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 5.6e-21 104.8 114 51.8
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 7.3e-21 104.4 100 55.0
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 7.3e-21 104.4 100 55.0
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 7.3e-21 104.4 101 53.5
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 9.5e-21 104.0 87 60.9
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 9.5e-21 104.0 114 51.8
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 1.2e-20 103.6 96 54.2
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 1.2e-20 103.6 111 53.2
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.2e-20 103.6 104 53.8
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 1.6e-20 103.2 99 53.5
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 1.6e-20 103.2 125 47.2
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 1.6e-20 103.2 110 50.0
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 1.6e-20 103.2 110 50.0
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 2.1e-20 102.8 92 56.5
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 2.1e-20 102.8 136 44.1
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 3.6e-20 102.1 111 53.2
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 3.6e-20 102.1 90 58.9
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 4.7e-20 101.7 100 54.0
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 6.1e-20 101.3 84 57.1
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 6.1e-20 101.3 87 58.6
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 6.1e-20 101.3 102 54.9
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 6.1e-20 101.3 118 50.8
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 6.1e-20 101.3 118 50.8
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 6.1e-20 101.3 112 49.1
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 6.1e-20 101.3 98 56.1
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 8.0e-20 100.9 93 54.8
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 8.0e-20 100.9 93 54.8
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 8.0e-20 100.9 106 51.9
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 8.0e-20 100.9 90 55.6
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 8.0e-20 100.9 99 55.6
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 8.0e-20 100.9 123 49.6
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.0e-19 100.5 90 53.3
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 1.4e-19 100.1 106 51.9
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 1.4e-19 100.1 92 54.3
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 1.4e-19 100.1 92 54.3
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 1.4e-19 100.1 96 54.2
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 1.8e-19 99.8 93 59.1
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 2.3e-19 99.4 96 57.3
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 2.3e-19 99.4 111 50.5
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 2.3e-19 99.4 114 54.4
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 3.1e-19 99.0 106 50.9
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 4.0e-19 98.6 96 55.2
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 6.8e-19 97.8 110 49.1
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 6.8e-19 97.8 102 52.9
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 6.8e-19 97.8 110 50.0
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 8.9e-19 97.4 91 52.7
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 1.2e-18 97.1 101 48.5
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 1.2e-18 97.1 94 54.3
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 1.2e-18 97.1 101 51.5
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 1.2e-18 97.1 107 51.4
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 1.5e-18 96.7 82 58.5
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 1.5e-18 96.7 110 48.2
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.0e-18 96.3 100 53.0
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 2.0e-18 96.3 95 52.6
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 2.0e-18 96.3 104 51.9
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 2.6e-18 95.9 103 47.6
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 3.4e-18 95.5 108 47.2
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 3.4e-18 95.5 93 50.5
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 4.4e-18 95.1 86 52.3
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 5.8e-18 94.7 119 46.2
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 7.5e-18 94.4 93 55.9
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 9.8e-18 94.0 90 52.2
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.3e-17 93.6 100 50.0
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 1.7e-17 93.2 82 59.8
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 2.9e-17 92.4 121 43.8
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 2.9e-17 92.4 90 51.1
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 3.7e-17 92.0 114 48.2
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 6.4e-17 91.3 88 55.7
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 8.3e-17 90.9 88 55.7
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 8.3e-17 90.9 129 44.2
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 8.3e-17 90.9 108 43.5
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.1e-16 90.5 123 46.3
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 1.1e-16 90.5 104 49.0
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 1.4e-16 90.1 89 49.4
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 2.4e-16 89.4 121 41.3
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.4e-16 89.4 123 45.5
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 3.2e-16 89.0 94 50.0
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 5.4e-16 88.2 104 45.2
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 7.0e-16 87.8 85 50.6
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 1.6e-15 86.7 72 56.9
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 7.8e-15 84.3 95 46.3
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 1.7e-14 83.2 75 54.7
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 2.3e-14 82.8 80 56.2
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 1.1e-08 63.9 111 34.2
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 6.0e-07 58.2 56 50.0
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 6.0e-07 58.2 112 31.2
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 7.8e-07 57.8 92 29.3
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 7.8e-07 57.8 113 31.9
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 1.3e-06 57.0 92 29.3
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 3.0e-06 55.8 100 29.0
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 3.0e-06 55.8 122 28.7
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 3.9e-06 55.5 109 27.5
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 3.9e-06 55.5 130 30.8
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 3.9e-06 55.5 130 30.8
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 3.9e-06 55.5 89 31.5
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 3.9e-06 55.5 84 32.1
TPR.G33210 Trifolium pratense HOM05D000789 ORTHO05D000897 3.9e-06 55.5 107 29.9
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 6.6e-06 54.7 113 26.5
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 6.6e-06 54.7 130 30.0
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 6.6e-06 54.7 84 32.1
TPR.G33162 Trifolium pratense HOM05D000789 ORTHO05D000897 6.6e-06 54.7 107 29.9
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 8.6e-06 54.3 113 26.5
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 8.6e-06 54.3 84 32.1
Lalb_Chr02g0148321 Lupinus albus HOM05D000789 ORTHO05D000897 8.6e-06 54.3 109 28.4


User provided reference genes

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