Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.0e-134 483.4 239 100.0
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.2e-58 230.7 148 83.1
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.8e-17 92.8 149 40.9
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.4e-16 90.9 159 40.9
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.9e-16 90.5 133 43.6
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 4.2e-16 89.4 143 45.5
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.5e-16 89.0 144 43.1
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.6e-15 87.4 151 40.4
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 2.7e-15 86.7 150 40.0
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 4.6e-15 85.9 144 41.7
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 6.0e-15 85.5 164 36.6
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.3e-14 84.3 145 40.7
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.3e-14 84.3 144 41.0
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 1.8e-14 84.0 139 38.8
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.8e-14 84.0 147 39.5
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 2.3e-14 83.6 144 42.4
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.0e-14 83.2 142 42.3
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 3.9e-14 82.8 146 39.7
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 6.7e-14 82.0 97 48.5
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 8.7e-14 81.6 144 37.5
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 8.7e-14 81.6 144 38.2
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.1e-13 81.3 146 38.4
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.1e-13 81.3 144 40.3
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 1.1e-13 81.3 144 40.3
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 1.5e-13 80.9 144 40.3
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 1.5e-13 80.9 149 38.9
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 1.9e-13 80.5 143 40.6
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.9e-13 80.5 144 36.8
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 2.5e-13 80.1 148 42.6
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 5.7e-13 79.0 149 36.9
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.3e-12 77.8 141 41.1
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 2.2e-12 77.0 157 36.9
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 2.2e-12 77.0 157 36.9
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 2.2e-12 77.0 144 37.5
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 2.2e-12 77.0 114 42.1
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 2.2e-12 77.0 144 36.8
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.8e-12 75.9 147 39.5
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 4.8e-12 75.9 142 38.0
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 6.3e-12 75.5 151 37.1
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 6.3e-12 75.5 139 41.7
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 6.3e-12 75.5 133 42.9
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 1.1e-11 74.7 144 37.5
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.1e-11 74.7 153 37.3
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.1e-11 74.7 134 35.8
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 1.4e-11 74.3 147 38.8
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.4e-11 73.6 131 40.5
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.4e-11 73.6 150 37.3
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 2.4e-11 73.6 146 36.3
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 3.1e-11 73.2 146 39.0
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.1e-11 73.2 146 40.4
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 3.1e-11 73.2 146 40.4
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 6.9e-11 72.0 146 37.7
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 6.9e-11 72.0 146 39.0
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 6.9e-11 72.0 134 38.1
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 9.0e-11 71.6 146 37.7
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.2e-10 71.2 148 39.2
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.2e-10 71.2 145 35.9
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.2e-10 71.2 140 40.7
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.5e-10 70.9 137 39.4
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.0e-10 70.5 110 41.8
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 2.0e-10 70.5 137 40.1
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 2.0e-10 70.5 167 35.9
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.6e-10 70.1 108 41.7
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 3.4e-10 69.7 124 41.1
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 4.5e-10 69.3 162 35.2
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 4.5e-10 69.3 143 36.4
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 5.9e-10 68.9 110 40.9
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 5.9e-10 68.9 109 43.1
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.9e-10 68.9 153 35.9
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 5.9e-10 68.9 153 35.9
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 1.0e-09 68.2 110 40.9
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.0e-09 68.2 147 38.8
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.0e-09 68.2 105 42.9
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.3e-09 67.8 111 41.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.3e-09 67.8 144 36.1
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 1.3e-09 67.8 151 36.4
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.7e-09 67.4 128 37.5
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.7e-09 67.4 153 35.9
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 2.2e-09 67.0 137 38.7
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 3.8e-09 66.2 142 33.1
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 3.8e-09 66.2 142 35.9
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 5.0e-09 65.9 146 33.6
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 6.5e-09 65.5 136 37.5
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 6.5e-09 65.5 186 29.6
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 6.5e-09 65.5 79 44.3
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 8.5e-09 65.1 120 44.2
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 8.5e-09 65.1 109 38.5
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.4e-08 64.3 108 42.6
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 1.4e-08 64.3 98 38.8
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.4e-08 64.3 143 37.1
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 1.9e-08 63.9 113 38.1
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.9e-08 63.9 167 34.7
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.9e-08 63.9 148 37.2
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.9e-08 63.9 79 43.0
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 2.5e-08 63.5 84 45.2
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 3.2e-08 63.2 104 39.4
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 3.2e-08 63.2 126 34.9
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 3.2e-08 63.2 120 40.8
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 5.5e-08 62.4 110 39.1
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 7.2e-08 62.0 85 44.7
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 7.2e-08 62.0 126 38.9
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 7.2e-08 62.0 144 34.0
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 7.2e-08 62.0 127 36.2
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.2e-07 61.2 144 34.7
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.2e-07 61.2 150 33.3
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.2e-07 61.2 146 32.2
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 1.2e-07 61.2 151 33.1
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.6e-07 60.8 126 34.9
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.6e-07 60.8 126 34.9
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.1e-07 60.5 145 33.1
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 2.1e-07 60.5 122 41.8
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 2.7e-07 60.1 95 37.9
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 2.7e-07 60.1 145 34.5
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.6e-07 59.7 151 33.8
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.6e-07 59.7 120 38.3
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.6e-07 59.3 146 35.6
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 7.9e-07 58.5 108 38.0
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 7.9e-07 58.5 153 32.7
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 7.9e-07 58.5 104 40.4
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 7.9e-07 58.5 135 34.8
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 7.9e-07 58.5 135 34.8
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 1.0e-06 58.2 121 38.8
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 1.0e-06 58.2 119 37.8
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.0e-06 58.2 80 48.8
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.0e-06 58.2 151 33.8
SEGI_01989 Sequoiadendron giganteum HOM05D003947 ORTHO05D004614 1.0e-06 58.2 130 34.6
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 1.4e-06 57.8 102 35.3
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 1.4e-06 57.8 102 35.3
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 1.4e-06 57.8 100 37.0
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.8e-06 57.4 47 57.4
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 1.8e-06 57.4 87 35.6
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.8e-06 57.4 110 37.3
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 2.3e-06 57.0 118 38.1
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 2.3e-06 57.0 147 32.7
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 3.0e-06 56.6 111 36.9
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 3.9e-06 56.2 86 36.0
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 3.9e-06 56.2 122 38.5
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.1e-06 55.8 151 31.8
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 6.7e-06 55.5 100 31.0
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 8.8e-06 55.1 86 38.4
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 8.8e-06 55.1 105 39.0


User provided reference genes

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